Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_F07
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.4  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   5.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 489 LIVHSQVIILYSLRPHNRKACPHGNSRWVLQTDDYFL 599
           ++  S V  +  L  H+R A  H  S WV     Y+L
Sbjct: 304 MVASSVVSTILILNYHHRNADTHEMSEWVKVVFLYWL 340


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 126 YSHRSIKFIDITCEIIYSSKISKMIHL 46
           ++ R  ++  + CE +Y S+ S M H+
Sbjct: 29  HAERQEEYRCVICERVYCSRNSLMTHI 55


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 115 VHKIYRYHL*NYLFFKDK*NDSFGGQH 35
           V  ++RY L  Y FFKD    SF  QH
Sbjct: 327 VSDVFRYGLLIYDFFKD---SSFRIQH 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,592
Number of Sequences: 438
Number of extensions: 3483
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)