Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_F06
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0074 - 615794-615883,616186-616391,616524-616614                 30   1.4  
08_01_0418 - 3716226-3716279,3716531-3716581,3716656-3716751,371...    29   4.2  
10_08_1042 - 22515298-22515354,22515614-22515709,22515806-225159...    28   7.4  
11_08_0082 + 28239159-28241237                                         27   9.7  
05_05_0122 - 22533212-22533375,22533658-22533763,22533878-22533916     27   9.7  

>12_01_0074 - 615794-615883,616186-616391,616524-616614
          Length = 128

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 327 EAQTALEKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGNYPLWCK 467
           E +  +E +AL + I    K+   W   T  +  + ++IG+Y  W K
Sbjct: 63  ERRIEIEARALLATIARYKKQTDQWLAATNAINSVLKEIGDYENWMK 109


>08_01_0418 -
           3716226-3716279,3716531-3716581,3716656-3716751,
           3717037-3717194,3717303-3717417,3717511-3717564,
           3717843-3717950,3718494-3718583,3718818-3718856,
           3718993-3719172,3719264-3719576,3719659-3719834
          Length = 477

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/76 (27%), Positives = 33/76 (43%)
 Frame = +3

Query: 276 LTKENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGNYP 455
           L +EN + L ++++   + Q ALE+K      L + +K  T + Q K   L     G Y 
Sbjct: 247 LAQENSKLLPKIVESPEKLQRALEEKKTARAELKNAEKIATQSVQEKTATLEIYSKG-YE 305

Query: 456 LWCKDGKKVSTTLLQV 503
              K   K+     QV
Sbjct: 306 KLSKHSTKIQALQEQV 321


>10_08_1042 -
           22515298-22515354,22515614-22515709,22515806-22515988,
           22516277-22516365,22516481-22516722,22517008-22518116
          Length = 591

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/67 (25%), Positives = 26/67 (38%)
 Frame = +3

Query: 414 KRVGLIARKIGNYPLWCKDGKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKY 593
           + +  + RK  N    C D    S       DN V+++   E +K  IK + K    Q Y
Sbjct: 14  RNISSLKRKRDNPAARCADAGNTSKLHKHPADNSVVRFYVDEGHKAKIKCHFKMQIIQSY 73

Query: 594 GCILVGA 614
              +  A
Sbjct: 74  QNFMTSA 80


>11_08_0082 + 28239159-28241237
          Length = 692

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 349 FSNAVCASSLSFITSSKNCLFSLVR*SSVHTLSFG-TYQXRW 227
           F+ A C   +SFI S+K  L ++     +H + +G +Y  +W
Sbjct: 383 FAAACCIKKVSFIFSNKTILDAVAGKRKLHIVDYGLSYGFQW 424


>05_05_0122 - 22533212-22533375,22533658-22533763,22533878-22533916
          Length = 102

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 258 VWTDDYLTKENKQFLEEVIKDKLEAQTALEKKALTSPILND 380
           VW +  L KENK+F E   KD+ E     E       +L+D
Sbjct: 49  VWKE--LEKENKEFFETYNKDRAERNIEAETMQRIQKMLSD 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,729,415
Number of Sequences: 37544
Number of extensions: 307931
Number of successful extensions: 728
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)