Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_F06
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13875-9|AAA21160.3|  403|Caenorhabditis elegans Hypothetical pr...    56   3e-08
AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched rela...    30   1.6  
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    29   2.8  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z92827-5|CAB07325.1|  732|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un...    28   6.6  
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    28   6.6  
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    28   6.6  
AL032656-3|CAD12890.1|  731|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF416781-1|AAL38510.1|  731|Caenorhabditis elegans PH domain pro...    28   6.6  
AF324505-1|AAL49495.1|  731|Caenorhabditis elegans CED-12 protein.     28   6.6  
U53154-7|AAC25857.1|  356|Caenorhabditis elegans Nuclear hormone...    27   8.7  
AF273783-1|AAG15132.1|  358|Caenorhabditis elegans nuclear recep...    27   8.7  

>U13875-9|AAA21160.3|  403|Caenorhabditis elegans Hypothetical
           protein C26E6.6 protein.
          Length = 403

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
 Frame = +3

Query: 276 LTKENKQFLEEVI-KDKLEAQT-ALEKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGN 449
           +++  K  LE VI K+ L A T A +    T+  + D+  +      ++RVGL+ RKIG 
Sbjct: 59  ISQGTKNLLETVIEKETLAASTIAFQNSQETNVSVVDIPDS------SRRVGLVVRKIGM 112

Query: 450 YPLWCKDGKKVSTTLLQVVDNHVIKYIPPEE-YKPMIKSNVKWVEKQ-KYGCILVGAENI 623
            P W  +G ++  T+L+V +NHV+    PE  YK       K   +      + VGA N 
Sbjct: 113 LPQWTNEGNRILCTVLEVDENHVVSITSPEAWYKSSAVGKRKAFNRHGPMWRVTVGAGND 172

Query: 624 DPXVVT 641
           DP   T
Sbjct: 173 DPTKYT 178


>AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched related
           family protein 15 protein.
          Length = 840

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +3

Query: 213 SLDFVHRYWYVPKERVWTDDYLTKENKQFLEEVIKDKLEAQTALEKKALTSPILND-VKK 389
           S+D VH  + +P      +++ ++E  +  E+ +   LE QT  +    +  IL D ++K
Sbjct: 202 SIDMVHFVYQIPA----YNEHTSEEMSKIFEQSLTALLENQTTFDTSMFSLSILKDEMQK 257

Query: 390 NVTWT 404
           N T+T
Sbjct: 258 NSTYT 262


>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
           protein F36A2.13 protein.
          Length = 2944

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 456 LWCKDGKKVSTTLLQVVDNHV--IKYIPPEEYKPMIKS 563
           +W  + +K     +QVVDN++  +K++P    KP+ +S
Sbjct: 656 VWIHEHRKRDVMTVQVVDNNLVAVKHVPNSSQKPIFQS 693


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical
           protein F36A2.13 protein.
          Length = 2944

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 456 LWCKDGKKVSTTLLQVVDNHV--IKYIPPEEYKPMIKS 563
           +W  + +K     +QVVDN++  +K++P    KP+ +S
Sbjct: 656 VWIHEHRKRDVMTVQVVDNNLVAVKHVPNSSQKPIFQS 693


>Z92827-5|CAB07325.1|  732|Caenorhabditis elegans Hypothetical
           protein C29F7.6 protein.
          Length = 732

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 341 IRKKSIDLSHFKRCQ-KKCNMD 403
           I   S++LSH +RCQ KKC  D
Sbjct: 684 IEDASVELSHVERCQGKKCKRD 705


>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical protein
            T08G11.1b protein.
          Length = 3185

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +3

Query: 246  PKERVWTDDY-LTKENKQFLEEVIKDKLEAQTALEKKALTSPI---LNDVKKNVTWTPQT 413
            P+   +  +Y LT+++  F    +   L  +  LE KA    +   LN+++KN   TP+ 
Sbjct: 932  PESPFFATEYALTEQSVDFRFTKLAVSLHQEGVLELKAFGEALQAQLNELQKN---TPEE 988

Query: 414  KRVGLIARKI 443
            K+V   ARKI
Sbjct: 989  KKVEETARKI 998


>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical protein
            T08G11.1a protein.
          Length = 3212

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +3

Query: 246  PKERVWTDDY-LTKENKQFLEEVIKDKLEAQTALEKKALTSPI---LNDVKKNVTWTPQT 413
            P+   +  +Y LT+++  F    +   L  +  LE KA    +   LN+++KN   TP+ 
Sbjct: 932  PESPFFATEYALTEQSVDFRFTKLAVSLHQEGVLELKAFGEALQAQLNELQKN---TPEE 988

Query: 414  KRVGLIARKI 443
            K+V   ARKI
Sbjct: 989  KKVEETARKI 998


>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 6 protein.
          Length = 2098

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 361  VNAFFSNAVCASSLSFITSSKNCLFSLVR*SSVHTL 254
            VN F  N +   S+    +S+ CLF L+R  +V+ L
Sbjct: 1510 VNEFTGNTLLTESVVKGENSRTCLFGLIRAENVYVL 1545


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
            protein 1 protein.
          Length = 1963

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/46 (28%), Positives = 30/46 (65%)
 Frame = +3

Query: 249  KERVWTDDYLTKENKQFLEEVIKDKLEAQTALEKKALTSPILNDVK 386
            KER+   ++  +EN++ L++VI ++   Q  L++++  S  L+D++
Sbjct: 864  KERLLKMEHDFRENEKKLDQVIVERAVIQEQLQQESENSAELDDIR 909


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
           protein Y26D4A.9 protein.
          Length = 1435

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
 Frame = +3

Query: 273 YLTKENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGNY 452
           Y + + ++F+E +   KLE +  LEK           + N     QTK   L   K    
Sbjct: 144 YESDDKEEFIETL---KLELENRLEKLETKGSGFRMNRINKLQMYQTKMKSLTGAKYIEL 200

Query: 453 PLWCKDGKKVSTTLLQVVDNH-----VIKYIPPEEYKPMIKSN 566
           P W K+ K V    ++  DN      V+ ++ PE+  P   SN
Sbjct: 201 PAWIKNKKAVIN--IKNEDNFCFMWCVLAHLFPEKKNPQRVSN 241


>AL032656-3|CAD12890.1|  731|Caenorhabditis elegans Hypothetical
           protein Y106G6E.5 protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 153 VLYKNRGLIMRRVIFVVHRGSLDFVHRYWYVPKERVWTDDYLTKENKQF-LEEVIKDKLE 329
           VL + R ++ RR I  V   S D +  + Y   + +W ++ L KEN Q   E VI+ K +
Sbjct: 477 VLEQLRHVLKRREIQDVEELSAD-LETFSYRAMQEIWREEQLGKENIQLHSEAVIQLKSK 535

Query: 330 AQTALEK 350
            +  +E+
Sbjct: 536 LRPKMEE 542


>AF416781-1|AAL38510.1|  731|Caenorhabditis elegans PH domain
           protein CED-12 protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 153 VLYKNRGLIMRRVIFVVHRGSLDFVHRYWYVPKERVWTDDYLTKENKQF-LEEVIKDKLE 329
           VL + R ++ RR I  V   S D +  + Y   + +W ++ L KEN Q   E VI+ K +
Sbjct: 477 VLEQLRHVLKRREIQDVEELSAD-LETFSYRAMQEIWREEQLGKENIQLHSEAVIQLKSK 535

Query: 330 AQTALEK 350
            +  +E+
Sbjct: 536 LRPKMEE 542


>AF324505-1|AAL49495.1|  731|Caenorhabditis elegans CED-12 protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 153 VLYKNRGLIMRRVIFVVHRGSLDFVHRYWYVPKERVWTDDYLTKENKQF-LEEVIKDKLE 329
           VL + R ++ RR I  V   S D +  + Y   + +W ++ L KEN Q   E VI+ K +
Sbjct: 477 VLEQLRHVLKRREIQDVEELSAD-LETFSYRAMQEIWREEQLGKENIQLHSEAVIQLKSK 535

Query: 330 AQTALEK 350
            +  +E+
Sbjct: 536 LRPKMEE 542


>U53154-7|AAC25857.1|  356|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 42 protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 371 FKRCQKKCNMDSSNKKSGTYCTKDRKLSI 457
           F+RC ++C +D+  +K    C  D+ L +
Sbjct: 45  FRRCDRQCKVDTGMRKLCASCRYDKCLKV 73


>AF273783-1|AAG15132.1|  358|Caenorhabditis elegans nuclear receptor
           NHR-42 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 371 FKRCQKKCNMDSSNKKSGTYCTKDRKLSI 457
           F+RC ++C +D+  +K    C  D+ L +
Sbjct: 47  FRRCDRQCKVDTGMRKLCASCRYDKCLKV 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,139,321
Number of Sequences: 27780
Number of extensions: 293843
Number of successful extensions: 974
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)