Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_F06
(649 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 3.4
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 23 3.4
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 23 3.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.9
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 22 5.9
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 5.9
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.8
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 21 7.8
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 21 7.8
AF134818-1|AAD40234.1| 130|Apis mellifera lambda crystallin-lik... 21 7.8
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.6 bits (46), Expect = 3.4
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 489 TLLQVVDNHVIKYIPPEEYKPMIKSNVKW 575
T + V +N Y+PP +K K ++ W
Sbjct: 126 TNVVVKNNGTCLYVPPGIFKSTCKIDITW 154
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 22.6 bits (46), Expect = 3.4
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 359 DLSHFKRCQKKCNMDSSNKKSGTYCTKDRKLSI 457
DLS+ R +K C +D + YC + L++
Sbjct: 141 DLSYACREEKSCIIDKRQRNRCQYCRYQKCLAM 173
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 22.6 bits (46), Expect = 3.4
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 359 DLSHFKRCQKKCNMDSSNKKSGTYCTKDRKLSI 457
DLS+ R +K C +D + YC + L++
Sbjct: 141 DLSYACREEKSCIIDKRQRNRCQYCRYQKCLAM 173
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.4
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +3
Query: 489 TLLQVVDNHVIKYIPPEEYKPMIKSNVKW 575
T + V N Y+PP +K K ++ W
Sbjct: 89 TSVVVTHNGSCLYVPPGIFKSTCKIDITW 117
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 5.9
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +3
Query: 489 TLLQVVDNHVIKYIPPEEYKPMIKSNVKW 575
T + V N Y+PP +K K ++ W
Sbjct: 157 TNVVVTHNGSCLYVPPGIFKSTCKIDITW 185
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 5.9
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +3
Query: 489 TLLQVVDNHVIKYIPPEEYKPMIKSNVKW 575
T + V N Y+PP +K K ++ W
Sbjct: 157 TNVVVTHNGSCLYVPPGIFKSTCKIDITW 185
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 21.8 bits (44), Expect = 5.9
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +3
Query: 240 YVPKERVWTDDYLTKEN 290
YVP E +W D + N
Sbjct: 96 YVPSEHIWLPDIVLYNN 112
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.8 bits (44), Expect = 5.9
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +3
Query: 240 YVPKERVWTDDYLTKEN 290
YVP E +W D + N
Sbjct: 109 YVPSENIWLPDIVLYNN 125
Score = 21.4 bits (43), Expect = 7.8
Identities = 8/29 (27%), Positives = 15/29 (51%)
Frame = +3
Query: 519 IKYIPPEEYKPMIKSNVKWVEKQKYGCIL 605
+ + PP YK + NV++ + CI+
Sbjct: 146 VSWKPPAIYKSSCEINVEYFPFDEQSCIM 174
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +3
Query: 525 YIPPEEYKPMIKSNVKW 575
Y+PP +K K +V W
Sbjct: 101 YVPPGIFKSTCKMDVAW 117
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.4 bits (43), Expect = 7.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2
Query: 183 ALSNLDFCKAPHNNFKLFGNI 121
A+S+L CK H+N + G +
Sbjct: 219 AMSDLVICKLSHSNASVAGGM 239
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 21.4 bits (43), Expect = 7.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2
Query: 183 ALSNLDFCKAPHNNFKLFGNI 121
A+S+L CK H+N + G +
Sbjct: 219 AMSDLVICKLSHSNASVAGGM 239
>AF134818-1|AAD40234.1| 130|Apis mellifera lambda crystallin-like
protein protein.
Length = 130
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +3
Query: 249 KERVWTDDYLTK 284
+ R+W DD LTK
Sbjct: 110 ERRIWRDDALTK 121
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,119
Number of Sequences: 438
Number of extensions: 3928
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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