Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_F02
(470 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 95 5e-21
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 89 3e-19
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 33 0.022
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 28 0.83
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 1.1
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 27 1.4
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 26 3.3
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 3.3
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 3.3
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 25 4.4
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 4.4
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp... 25 5.8
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 5.8
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 5.8
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 5.8
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 7.7
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 7.7
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 25 7.7
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar... 25 7.7
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 25 7.7
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 95.1 bits (226), Expect = 5e-21
Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Frame = +3
Query: 213 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 386
P KV K MG +I +RS++KPF+KVVNYNHLMPTRY ++ K +A K+P +R
Sbjct: 50 PLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSA 109
Query: 387 LRFNTRVRFEERYKSGKNKWFFXKLRF 467
R + FEE+Y+SGK+ WFF LRF
Sbjct: 110 ARKTVKKTFEEKYQSGKSAWFFTPLRF 136
Score = 70.5 bits (165), Expect = 1e-13
Identities = 28/58 (48%), Positives = 42/58 (72%)
Frame = +2
Query: 65 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKSAQEDG 238
M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP K + G
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMG 58
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 89.0 bits (211), Expect = 3e-19
Identities = 40/87 (45%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = +3
Query: 213 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 386
P KV K MG +I KRS++KPF+KV+NYNHLMPTRY ++ K + +P++R
Sbjct: 50 PLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSA 109
Query: 387 LRFNTRVRFEERYKSGKNKWFFXKLRF 467
+ + FEE+Y++GK+ WFF LRF
Sbjct: 110 AKKTVKNTFEEKYQTGKSAWFFTPLRF 136
Score = 74.1 bits (174), Expect = 1e-14
Identities = 30/58 (51%), Positives = 43/58 (74%)
Frame = +2
Query: 65 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKSAQEDG 238
M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP K + G
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMG 58
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 33.1 bits (72), Expect = 0.022
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +2
Query: 44 KRTNPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 157
K P+K+ + PG V ++L+GR+ G++ +V+ ++
Sbjct: 41 KAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 27.9 bits (59), Expect = 0.83
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 237 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 371
G + I R K P K+VNYNH + + +F K D+ DP
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 71 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 154
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 27.1 bits (57), Expect = 1.4
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 180 GMPSSLVSTGTPGKVHKRMGKNKIHKRSKIK 272
G P+SLVS+ T K+H +G+ I K S+++
Sbjct: 184 GSPTSLVSSNTASKLH--LGRKDIVKLSELR 212
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.8 bits (54), Expect = 3.3
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +3
Query: 330 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFXKLR 464
+SF F D K+ K K R E Y +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 3.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 150 TTKVPPTSHTGMPSSLVSTGTPGKVH 227
TT VPPT+H +S V T T +H
Sbjct: 143 TTVVPPTTHAN-TTSFVPTTTESSIH 167
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 3.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 141 SRITTKVPPTSHTGMPSSLVSTGT 212
SR+ T +PP S + +P+ +ST +
Sbjct: 177 SRLPTPLPPPSSSSLPTGTISTNS 200
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 4.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 171 LSEVPSS*FLTTIALRPAYRPLRTSTTLPG 82
L E+P + F T+ AY P S T+ G
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDG 718
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 4.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 368 VFQVFCAEFFKAEVNCITCWHQVIIVYNLDERLY 267
V+QVFC F A+ I +Q++ V NL E Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348
>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 5.8
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Frame = +3
Query: 216 GKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVD---FSFEKFSAKDLKDPAKRKK 386
G V + +G +IHK PF N N +TV F+ E + L D K K
Sbjct: 286 GLVTQPLGLFRIHKLPLALPFTNHANSNEAGDLSFTVSKRRFTIEPWVLPPLDDEQKDTK 345
Query: 387 L 389
+
Sbjct: 346 I 346
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 219 KVHKRMGKNKIHKRSKIKPFVKVV 290
K+ KR+G I SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 324 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 440
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 5.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 324 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 422
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 24.6 bits (51), Expect = 7.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 234 SSCALFRGYLSIPATKACPYGLSEV 160
SSCALF+ + TKAC + +S +
Sbjct: 247 SSCALFKIFHDNDNTKACNWTISRL 271
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 24.6 bits (51), Expect = 7.7
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -1
Query: 341 FKAEVNCITCWHQVIIVYNLDERLYLGPLVDFILSH 234
F V I C H V + + ++ GP ++F++ H
Sbjct: 90 FDNRVGVIECIHLVNFMCHDSLKINFGPRINFVIGH 125
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 24.6 bits (51), Expect = 7.7
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = -1
Query: 422 PLFKTYSRVETQLLTFSRVFQVFCAEFFKAEVNCITCWHQVIIVYNLDERLYLGPLVDFI 243
P+++ + + T S + CA+F E N + WH YNL R Y + D +
Sbjct: 749 PVYEDWHLLIFNASTSSMMKTWLCAKFSLKETNKTSFWHS---SYNLFNRQYHVDMPDNV 805
Query: 242 LSHP 231
P
Sbjct: 806 SDLP 809
>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 24.6 bits (51), Expect = 7.7
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = -3
Query: 204 SIPATKACPYGLSEVPSS*FLTTIALRPAYRPLRTSTTLPGFIILPILEGFVR 46
++P T Y S+ F +A A + +R + PG++ P+L +R
Sbjct: 144 ALPGTSV--YAASKAGLESFTKVLAAEVASKGIRVNAISPGYVDTPMLSSQIR 194
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 24.6 bits (51), Expect = 7.7
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +3
Query: 267 IKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTR 404
+ PF K Y H + T + S KF + K K R +TR
Sbjct: 39 VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,353
Number of Sequences: 5004
Number of extensions: 39303
Number of successful extensions: 144
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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