Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_F02
(470 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L19527-1|AAA19815.1| 136|Homo sapiens ribosomal protein L27 pro... 114 2e-25
L05094-1|AAC15857.1| 136|Homo sapiens ribosomal protein L27 pro... 114 2e-25
BC098560-1|AAH98560.1| 136|Homo sapiens ribosomal protein L27 p... 114 2e-25
BC021886-1|AAH21886.1| 140|Homo sapiens RPL27 protein protein. 114 2e-25
BC010026-1|AAH10026.1| 136|Homo sapiens ribosomal protein L27 p... 114 2e-25
BC007273-1|AAH07273.1| 136|Homo sapiens ribosomal protein L27 p... 114 2e-25
BC002588-1|AAH02588.1| 136|Homo sapiens ribosomal protein L27 p... 114 2e-25
BC001700-1|AAH01700.1| 136|Homo sapiens ribosomal protein L27 p... 114 2e-25
AB061851-1|BAB79492.1| 136|Homo sapiens ribosomal protein L27 p... 114 2e-25
U25752-1|AAA93226.1| 40|Homo sapiens ribosomal protein L27 pro... 58 2e-08
BC064401-1|AAH64401.1| 547|Homo sapiens TJAP1 protein protein. 30 3.5
BC046239-1|AAH46239.1| 557|Homo sapiens TJAP1 protein protein. 30 3.5
AL355802-3|CAI42618.1| 557|Homo sapiens RP3-337H4.1 protein. 30 3.5
AL355802-2|CAI42619.1| 547|Homo sapiens RP3-337H4.1 protein. 30 3.5
AK024269-1|BAB14867.1| 547|Homo sapiens protein ( Homo sapiens ... 30 3.5
Y18265-1|CAB41400.1| 1324|Homo sapiens zinc finger protein SALL1... 29 6.1
Y18264-1|CAB41399.1| 1324|Homo sapiens zinc finger protein SALL1... 29 6.1
CR542287-1|CAG47082.1| 353|Homo sapiens KCNAB2 protein. 29 6.1
CR542264-1|CAG47060.1| 353|Homo sapiens KCNAB2 protein. 29 6.1
AL035406-7|CAI19888.1| 95|Homo sapiens potassium voltage-gated... 29 6.1
AL035406-5|CAI19887.1| 254|Homo sapiens potassium voltage-gated... 29 6.1
AL035406-3|CAI19885.1| 353|Homo sapiens potassium voltage-gated... 29 6.1
AF044253-1|AAB99859.1| 353|Homo sapiens potassium channel beta ... 29 6.1
>L19527-1|AAA19815.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 114 bits (274), Expect = 2e-25
Identities = 56/87 (64%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Frame = +3
Query: 213 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKK 386
P KV MGK KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K
Sbjct: 50 PRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRK 109
Query: 387 LRFNTRVRFEERYKSGKNKWFFXKLRF 467
R +V+FEERYK+GKNKWFF KLRF
Sbjct: 110 ARREAKVKFEERYKTGKNKWFFQKLRF 136
Score = 100 bits (240), Expect = 2e-21
Identities = 46/71 (64%), Positives = 56/71 (78%)
Frame = +2
Query: 65 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKSAQEDGKE 244
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRK GK+
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 245 *NPQEVQDKAF 277
+ + K+F
Sbjct: 61 KIAKRSKIKSF 71
>L05094-1|AAC15857.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 114 bits (274), Expect = 2e-25
Identities = 56/87 (64%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Frame = +3
Query: 213 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKK 386
P KV MGK KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K
Sbjct: 50 PRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRK 109
Query: 387 LRFNTRVRFEERYKSGKNKWFFXKLRF 467
R +V+FEERYK+GKNKWFF KLRF
Sbjct: 110 ARREAKVKFEERYKTGKNKWFFQKLRF 136
Score = 100 bits (240), Expect = 2e-21
Identities = 46/71 (64%), Positives = 56/71 (78%)
Frame = +2
Query: 65 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKSAQEDGKE 244
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRK GK+
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 245 *NPQEVQDKAF 277
+ + K+F
Sbjct: 61 KIAKRSKIKSF 71
>BC098560-1|AAH98560.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 114 bits (274), Expect = 2e-25
Identities = 56/87 (64%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Frame = +3
Query: 213 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKK 386
P KV MGK KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K
Sbjct: 50 PRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRK 109
Query: 387 LRFNTRVRFEERYKSGKNKWFFXKLRF 467
R +V+FEERYK+GKNKWFF KLRF
Sbjct: 110 ARREAKVKFEERYKTGKNKWFFQKLRF 136
Score = 100 bits (240), Expect = 2e-21
Identities = 46/71 (64%), Positives = 56/71 (78%)
Frame = +2
Query: 65 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKSAQEDGKE 244
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRK GK+
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 245 *NPQEVQDKAF 277
+ + K+F
Sbjct: 61 KIAKRSKIKSF 71
>BC021886-1|AAH21886.1| 140|Homo sapiens RPL27 protein protein.
Length = 140
Score = 114 bits (274), Expect = 2e-25
Identities = 56/87 (64%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Frame = +3
Query: 213 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKK 386
P KV MGK KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K
Sbjct: 54 PRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRK 113
Query: 387 LRFNTRVRFEERYKSGKNKWFFXKLRF 467
R +V+FEERYK+GKNKWFF KLRF
Sbjct: 114 ARREAKVKFEERYKTGKNKWFFQKLRF 140
Score = 79.8 bits (188), Expect = 4e-15
Identities = 36/60 (60%), Positives = 46/60 (76%)
Frame = +2
Query: 98 LVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKSAQEDGKE*NPQEVQDKAF 277
LVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRK GK+ + + K+F
Sbjct: 16 LVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSF 75
>BC010026-1|AAH10026.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 114 bits (274), Expect = 2e-25
Identities = 56/87 (64%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Frame = +3
Query: 213 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKK 386
P KV MGK KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K
Sbjct: 50 PRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRK 109
Query: 387 LRFNTRVRFEERYKSGKNKWFFXKLRF 467
R +V+FEERYK+GKNKWFF KLRF
Sbjct: 110 ARREAKVKFEERYKTGKNKWFFQKLRF 136
Score = 100 bits (240), Expect = 2e-21
Identities = 46/71 (64%), Positives = 56/71 (78%)
Frame = +2
Query: 65 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKSAQEDGKE 244
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRK GK+
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 245 *NPQEVQDKAF 277
+ + K+F
Sbjct: 61 KIAKRSKIKSF 71
>BC007273-1|AAH07273.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 114 bits (274), Expect = 2e-25
Identities = 56/87 (64%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Frame = +3
Query: 213 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKK 386
P KV MGK KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K
Sbjct: 50 PRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRK 109
Query: 387 LRFNTRVRFEERYKSGKNKWFFXKLRF 467
R +V+FEERYK+GKNKWFF KLRF
Sbjct: 110 ARREAKVKFEERYKTGKNKWFFQKLRF 136
Score = 100 bits (240), Expect = 2e-21
Identities = 46/71 (64%), Positives = 56/71 (78%)
Frame = +2
Query: 65 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKSAQEDGKE 244
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRK GK+
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 245 *NPQEVQDKAF 277
+ + K+F
Sbjct: 61 KIAKRSKIKSF 71
>BC002588-1|AAH02588.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 114 bits (274), Expect = 2e-25
Identities = 56/87 (64%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Frame = +3
Query: 213 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKK 386
P KV MGK KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K
Sbjct: 50 PRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRK 109
Query: 387 LRFNTRVRFEERYKSGKNKWFFXKLRF 467
R +V+FEERYK+GKNKWFF KLRF
Sbjct: 110 ARREAKVKFEERYKTGKNKWFFQKLRF 136
Score = 100 bits (240), Expect = 2e-21
Identities = 46/71 (64%), Positives = 56/71 (78%)
Frame = +2
Query: 65 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKSAQEDGKE 244
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRK GK+
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 245 *NPQEVQDKAF 277
+ + K+F
Sbjct: 61 KIAKRSKIKSF 71
>BC001700-1|AAH01700.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 114 bits (274), Expect = 2e-25
Identities = 56/87 (64%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Frame = +3
Query: 213 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKK 386
P KV MGK KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K
Sbjct: 50 PRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRK 109
Query: 387 LRFNTRVRFEERYKSGKNKWFFXKLRF 467
R +V+FEERYK+GKNKWFF KLRF
Sbjct: 110 ARREAKVKFEERYKTGKNKWFFQKLRF 136
Score = 100 bits (240), Expect = 2e-21
Identities = 46/71 (64%), Positives = 56/71 (78%)
Frame = +2
Query: 65 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKSAQEDGKE 244
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRK GK+
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 245 *NPQEVQDKAF 277
+ + K+F
Sbjct: 61 KIAKRSKIKSF 71
>AB061851-1|BAB79492.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 114 bits (274), Expect = 2e-25
Identities = 56/87 (64%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Frame = +3
Query: 213 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKK 386
P KV MGK KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K
Sbjct: 50 PRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRK 109
Query: 387 LRFNTRVRFEERYKSGKNKWFFXKLRF 467
R +V+FEERYK+GKNKWFF KLRF
Sbjct: 110 ARREAKVKFEERYKTGKNKWFFQKLRF 136
Score = 100 bits (240), Expect = 2e-21
Identities = 46/71 (64%), Positives = 56/71 (78%)
Frame = +2
Query: 65 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKSAQEDGKE 244
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRK GK+
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 245 *NPQEVQDKAF 277
+ + K+F
Sbjct: 61 KIAKRSKIKSF 71
>U25752-1|AAA93226.1| 40|Homo sapiens ribosomal protein L27
protein.
Length = 40
Score = 58.0 bits (134), Expect = 2e-08
Identities = 25/39 (64%), Positives = 32/39 (82%), Gaps = 1/39 (2%)
Frame = +3
Query: 354 KDL-KDPAKRKKLRFNTRVRFEERYKSGKNKWFFXKLRF 467
KD+ +DPA ++K R +V+FEERYK+GKNKWFF KLRF
Sbjct: 2 KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 40
>BC064401-1|AAH64401.1| 547|Homo sapiens TJAP1 protein protein.
Length = 547
Score = 30.3 bits (65), Expect = 3.5
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 120 RVARLS*SRITTKVPPTSHT-GMPSSLVSTGTPGKVHKRMGKNKIHKRSKI 269
R + L +R T + P TSHT G L S+ P + KRMG + +H++ +
Sbjct: 486 RQSLLPINRGTEEGPGTSHTEGRAWPLPSSSRPQRSPKRMGVHHLHRKDSL 536
>BC046239-1|AAH46239.1| 557|Homo sapiens TJAP1 protein protein.
Length = 557
Score = 30.3 bits (65), Expect = 3.5
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 120 RVARLS*SRITTKVPPTSHT-GMPSSLVSTGTPGKVHKRMGKNKIHKRSKI 269
R + L +R T + P TSHT G L S+ P + KRMG + +H++ +
Sbjct: 496 RQSLLPINRGTEEGPGTSHTEGRAWPLPSSSRPQRSPKRMGVHHLHRKDSL 546
>AL355802-3|CAI42618.1| 557|Homo sapiens RP3-337H4.1 protein.
Length = 557
Score = 30.3 bits (65), Expect = 3.5
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 120 RVARLS*SRITTKVPPTSHT-GMPSSLVSTGTPGKVHKRMGKNKIHKRSKI 269
R + L +R T + P TSHT G L S+ P + KRMG + +H++ +
Sbjct: 496 RQSLLPINRGTEEGPGTSHTEGRAWPLPSSSRPQRSPKRMGVHHLHRKDSL 546
>AL355802-2|CAI42619.1| 547|Homo sapiens RP3-337H4.1 protein.
Length = 547
Score = 30.3 bits (65), Expect = 3.5
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 120 RVARLS*SRITTKVPPTSHT-GMPSSLVSTGTPGKVHKRMGKNKIHKRSKI 269
R + L +R T + P TSHT G L S+ P + KRMG + +H++ +
Sbjct: 486 RQSLLPINRGTEEGPGTSHTEGRAWPLPSSSRPQRSPKRMGVHHLHRKDSL 536
>AK024269-1|BAB14867.1| 547|Homo sapiens protein ( Homo sapiens
cDNA FLJ14207 fis, clone NT2RP3003185, weakly similar to
TROPOMYOSIN 1, FUSION PROTEIN 33. ).
Length = 547
Score = 30.3 bits (65), Expect = 3.5
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 120 RVARLS*SRITTKVPPTSHT-GMPSSLVSTGTPGKVHKRMGKNKIHKRSKI 269
R + L +R T + P TSHT G L S+ P + KRMG + +H++ +
Sbjct: 486 RQSLLPINRGTEEGPGTSHTEGRAWPLPSSSRPQRSPKRMGVHHLHRKDSL 536
>Y18265-1|CAB41400.1| 1324|Homo sapiens zinc finger protein SALL1
protein.
Length = 1324
Score = 29.5 bits (63), Expect = 6.1
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -3
Query: 204 SIPATKACPYGLSEVPSS*FLTTIALRPAYRPLRTSTTLPGFIILPILEGFVR 46
+IP + PYG+S P + + +P L TS LP LP L F++
Sbjct: 519 NIPTSTGIPYGMSIPPEKPVTSWLDTKPVLPTLTTSVGLPLPPSLPSLIPFIK 571
>Y18264-1|CAB41399.1| 1324|Homo sapiens zinc finger protein SALL1
protein.
Length = 1324
Score = 29.5 bits (63), Expect = 6.1
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -3
Query: 204 SIPATKACPYGLSEVPSS*FLTTIALRPAYRPLRTSTTLPGFIILPILEGFVR 46
+IP + PYG+S P + + +P L TS LP LP L F++
Sbjct: 519 NIPTSTGIPYGMSIPPEKPVTSWLDTKPVLPTLTTSVGLPLPPSLPSLIPFIK 571
>CR542287-1|CAG47082.1| 353|Homo sapiens KCNAB2 protein.
Length = 353
Score = 29.5 bits (63), Expect = 6.1
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +3
Query: 165 PTSHTGMPS--SLVSTGTPGKVHKRMGKN 245
P S TG P+ SL TG+PG +++ +GK+
Sbjct: 3 PESTTGSPARLSLRQTGSPGMIYRNLGKS 31
>CR542264-1|CAG47060.1| 353|Homo sapiens KCNAB2 protein.
Length = 353
Score = 29.5 bits (63), Expect = 6.1
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +3
Query: 165 PTSHTGMPS--SLVSTGTPGKVHKRMGKN 245
P S TG P+ SL TG+PG +++ +GK+
Sbjct: 3 PESTTGSPARLSLRQTGSPGMIYRNLGKS 31
>AL035406-7|CAI19888.1| 95|Homo sapiens potassium voltage-gated
channel, shaker-related subfamily, beta member 2
protein.
Length = 95
Score = 29.5 bits (63), Expect = 6.1
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +3
Query: 165 PTSHTGMPS--SLVSTGTPGKVHKRMGKN 245
P S TG P+ SL TG+PG +++ +GK+
Sbjct: 3 PESTTGSPARLSLRQTGSPGMIYRNLGKS 31
>AL035406-5|CAI19887.1| 254|Homo sapiens potassium voltage-gated
channel, shaker-related subfamily, beta member 2
protein.
Length = 254
Score = 29.5 bits (63), Expect = 6.1
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +3
Query: 165 PTSHTGMPS--SLVSTGTPGKVHKRMGKN 245
P S TG P+ SL TG+PG +++ +GK+
Sbjct: 3 PESTTGSPARLSLRQTGSPGMIYRNLGKS 31
>AL035406-3|CAI19885.1| 353|Homo sapiens potassium voltage-gated
channel, shaker-related subfamily, beta member 2
protein.
Length = 353
Score = 29.5 bits (63), Expect = 6.1
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +3
Query: 165 PTSHTGMPS--SLVSTGTPGKVHKRMGKN 245
P S TG P+ SL TG+PG +++ +GK+
Sbjct: 3 PESTTGSPARLSLRQTGSPGMIYRNLGKS 31
>AF044253-1|AAB99859.1| 353|Homo sapiens potassium channel beta 2
subunit protein.
Length = 353
Score = 29.5 bits (63), Expect = 6.1
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +3
Query: 165 PTSHTGMPS--SLVSTGTPGKVHKRMGKN 245
P S TG P+ SL TG+PG +++ +GK+
Sbjct: 3 PESTTGSPARLSLRQTGSPGMIYRNLGKS 31
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,712,817
Number of Sequences: 237096
Number of extensions: 1404133
Number of successful extensions: 3195
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3186
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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