Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_F02
(470 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 112 1e-25
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 112 1e-25
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 31 0.42
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 31 0.42
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 31 0.42
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 29 1.3
U67956-1|AAB07690.2| 157|Caenorhabditis elegans Hypothetical pr... 28 2.9
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 28 2.9
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 28 2.9
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 28 2.9
Z71267-9|CAA95852.2| 380|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z71262-14|CAN99672.1| 380|Caenorhabditis elegans Hypothetical p... 27 5.1
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical pr... 27 6.8
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 27 6.8
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 27 6.8
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 27 6.8
Z49912-7|CAI70412.1| 554|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z49912-6|CAA90137.1| 615|Caenorhabditis elegans Hypothetical pr... 27 9.0
U50301-12|AAB37053.2| 486|Caenorhabditis elegans Hypothetical p... 27 9.0
U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 27 9.0
AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-li... 27 9.0
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 112 bits (269), Expect = 1e-25
Identities = 51/87 (58%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
Frame = +3
Query: 213 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 386
P KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K
Sbjct: 50 PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109
Query: 387 LRFNTRVRFEERYKSGKNKWFFXKLRF 467
+ +FEERYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136
Score = 93.1 bits (221), Expect = 9e-20
Identities = 42/60 (70%), Positives = 49/60 (81%)
Frame = +2
Query: 65 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKSAQEDGKE 244
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP K ++ GK+
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 112 bits (269), Expect = 1e-25
Identities = 51/87 (58%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
Frame = +3
Query: 213 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 386
P KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K
Sbjct: 50 PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109
Query: 387 LRFNTRVRFEERYKSGKNKWFFXKLRF 467
+ +FEERYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136
Score = 93.1 bits (221), Expect = 9e-20
Identities = 42/60 (70%), Positives = 49/60 (81%)
Frame = +2
Query: 65 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKSAQEDGKE 244
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP K ++ GK+
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 31.1 bits (67), Expect = 0.42
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +2
Query: 95 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKSAQEDGKE*NPQEVQDKA 274
++ ++G +G KA+ Y + D PYG + + G+ Y +A D +P +VQ
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY--MAAHVDN---SPAQVQSIT 230
Query: 275 FRQGCKL 295
RQG L
Sbjct: 231 IRQGNSL 237
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 31.1 bits (67), Expect = 0.42
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +2
Query: 95 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKSAQEDGKE*NPQEVQDKA 274
++ ++G +G KA+ Y + D PYG + + G+ Y +A D +P +VQ
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY--MAAHVDN---SPAQVQSIT 230
Query: 275 FRQGCKL 295
RQG L
Sbjct: 231 IRQGNSL 237
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 31.1 bits (67), Expect = 0.42
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +2
Query: 95 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKSAQEDGKE*NPQEVQDKA 274
++ ++G +G KA+ Y + D PYG + + G+ Y +A D +P +VQ
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY--MAAHVDN---SPAQVQSIT 230
Query: 275 FRQGCKL 295
RQG L
Sbjct: 231 IRQGNSL 237
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 29.5 bits (63), Expect = 1.3
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 71 KIMKPGKVVLVLSGRYAGRKAIVVK 145
K + PG V++VL+GR+ G++ + +K
Sbjct: 69 KTLTPGTVLIVLAGRHKGKRVVFLK 93
>U67956-1|AAB07690.2| 157|Caenorhabditis elegans Hypothetical
protein F16F9.1 protein.
Length = 157
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 286 TLTKGFILDLLWILFFPILLCTFP 215
TL K I L WI+F +L+C FP
Sbjct: 102 TLPKFVIGSLTWIVFILVLICFFP 125
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = -2
Query: 415 SKRTRVLK-RSFLRLAGSFRSFALNFSKLKSTV 320
S+ T V + +SFL L G +R F LNF+++ S++
Sbjct: 1250 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1282
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = -2
Query: 415 SKRTRVLK-RSFLRLAGSFRSFALNFSKLKSTV 320
S+ T V + +SFL L G +R F LNF+++ S++
Sbjct: 1153 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1185
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = -2
Query: 415 SKRTRVLK-RSFLRLAGSFRSFALNFSKLKSTV 320
S+ T V + +SFL L G +R F LNF+++ S++
Sbjct: 1164 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1196
>Z71267-9|CAA95852.2| 380|Caenorhabditis elegans Hypothetical
protein W01A8.6 protein.
Length = 380
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 160 YLRQAIRACLRRWYRQVPPEKCT 228
Y R + RA +R+W + PE CT
Sbjct: 144 YSRTSTRAMIRQWRKNRAPENCT 166
>Z71262-14|CAN99672.1| 380|Caenorhabditis elegans Hypothetical
protein W01A8.6 protein.
Length = 380
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 160 YLRQAIRACLRRWYRQVPPEKCT 228
Y R + RA +R+W + PE CT
Sbjct: 144 YSRTSTRAMIRQWRKNRAPENCT 166
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 216 GKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 344
G+ H N+ KR KI + YNHL+P T+D+S K
Sbjct: 391 GQNHVATHLNRQLKRQKISKLEREKIYNHLVP---TIDYSAMK 430
>Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical
protein K08E4.1 protein.
Length = 1208
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 53 NPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 154
N ++ K K G V+SGRY G ++V+ D
Sbjct: 465 NAHELRKYFKEGDHAKVISGRYEGHTGLIVRVKD 498
>Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical
protein K08E4.1 protein.
Length = 1208
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 53 NPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 154
N ++ K K G V+SGRY G ++V+ D
Sbjct: 465 NAHELRKYFKEGDHAKVISGRYEGHTGLIVRVKD 498
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 243 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 344
NK KR KI K YNHL+P T+D+S K
Sbjct: 426 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 243 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 344
NK KR KI K YNHL+P T+D+S K
Sbjct: 400 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 430
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 243 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 344
NK KR KI K YNHL+P T+D+S K
Sbjct: 426 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>Z49912-7|CAI70412.1| 554|Caenorhabditis elegans Hypothetical
protein T24F1.3b protein.
Length = 554
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 250 ILFFPILLCTFPGVPVDTSDEGMPVWLVGGTFVVILD 140
++F P+ L F G + E + +W G TF+ LD
Sbjct: 35 LVFRPVQLDHFGGAGQEDDGEQVDIWDFGATFLADLD 71
>Z49912-6|CAA90137.1| 615|Caenorhabditis elegans Hypothetical
protein T24F1.3a protein.
Length = 615
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 250 ILFFPILLCTFPGVPVDTSDEGMPVWLVGGTFVVILD 140
++F P+ L F G + E + +W G TF+ LD
Sbjct: 96 LVFRPVQLDHFGGAGQEDDGEQVDIWDFGATFLADLD 132
>U50301-12|AAB37053.2| 486|Caenorhabditis elegans Hypothetical
protein F20D6.10 protein.
Length = 486
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 286 TLTKGFILDLLWILFFPILLCTFPGVPVDTSDEGMPVWLVGGTFVV 149
TL +++ L+ +L +LC F GV DTS +P +V F++
Sbjct: 94 TLIFDYVVILMMVLILFSVLCLFCGVASDTSCLILPHIVVQAVFLL 139
>U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical
protein F31D5.4 protein.
Length = 989
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -1
Query: 410 TYSRVETQLLTFSRVFQVFCAEFFKAEVNCITCWHQVIIVYNLDERLYLGPLV 252
TYS + L ++V ++ A V +T + + I++NLD LY+ P +
Sbjct: 367 TYSEMGANL-NATQVAEISTILINSANVPGLTAENSMAILHNLDNMLYVSPTI 418
>AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-like
protein MTH-2 protein.
Length = 971
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -1
Query: 410 TYSRVETQLLTFSRVFQVFCAEFFKAEVNCITCWHQVIIVYNLDERLYLGPLV 252
TYS + L ++V ++ A V +T + + I++NLD LY+ P +
Sbjct: 349 TYSEMGANL-NATQVAEISTILINSANVPGLTAENSMAILHNLDNMLYVSPTI 400
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,446,278
Number of Sequences: 27780
Number of extensions: 216362
Number of successful extensions: 742
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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