Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_E24
(432 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces p... 42 3e-05
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 32 0.043
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 28 0.70
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 27 0.93
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 27 1.2
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 26 2.2
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 25 3.8
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 25 3.8
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 24 8.7
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 24 8.7
>SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 71
Score = 42.3 bits (95), Expect = 3e-05
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Frame = +3
Query: 147 ENWGTEDA--DDEDVSVWEDNWED-DVIQDDFNQQLRQQLEK 263
ENW +D D D ++WE+NW+D D+ DDF+ QL+ +L+K
Sbjct: 24 ENWPMKDTELDTGDDTLWENNWDDEDIGDDDFSVQLQAELKK 65
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 31.9 bits (69), Expect = 0.043
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 141 PAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQ-LRQQLEKL 266
P EN + D +DVS+ DN DV QD FN++ ++Q++ L
Sbjct: 378 PQEN-SAQIYDGKDVSMVNDNMHSDVRQDSFNKESIKQRIPSL 419
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 27.9 bits (59), Expect = 0.70
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +3
Query: 153 WGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 278
W ++ +D SVW + +D + + + +LEKL D++
Sbjct: 537 WKIKNGSIDDFSVWRSAFANDALDRLLEKVILPKLEKLMDEE 578
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 27.5 bits (58), Expect = 0.93
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 159 TEDADDEDVSV-WEDNWEDDVIQDDFNQQLRQQLEKLKDQKS 281
TE+A DED SV E++ E++ +D+ + +Q+ K +KS
Sbjct: 202 TEEASDEDESVDLEEDEEEEDEEDEEGDEEKQEPPSKKSKKS 243
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 27.1 bits (57), Expect = 1.2
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 177 EDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQ 275
+ +S+W + D + D F Q+++ + E LKD+
Sbjct: 162 DKLSIWTETDMSDRVTDAFKQKMQFEAELLKDE 194
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 26.2 bits (55), Expect = 2.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 216 RRLPSCLPKPIHLHHQRLLYPNFPR 142
R+ L + IH HH+RLL+PN R
Sbjct: 64 RKQAIILAREIH-HHRRLLHPNITR 87
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 159 TEDADDEDVSVWEDNWEDD-VIQDDF 233
T +A E++ W+DN ED+ ++ DF
Sbjct: 35 TNEAQREEIITWKDNREDEGEVKTDF 60
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 25.4 bits (53), Expect = 3.8
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +3
Query: 153 WGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKD 272
+G +D D+ED S +D ++ + + + + R++LEK+ +
Sbjct: 122 YGGDDYDNEDYSEEDDEFDARMEEQEALRLQRKRLEKVSE 161
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 24.2 bits (50), Expect = 8.7
Identities = 9/44 (20%), Positives = 26/44 (59%)
Frame = +3
Query: 147 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 278
+++ E++DD+ + + EDDV ++ + + +Q + K+++
Sbjct: 723 DDFENEESDDDKIFEQQTKIEDDVKNENKTEPVEEQKSEEKNEQ 766
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 24.2 bits (50), Expect = 8.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 147 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLK 269
E E +DDE +S ++ ED+ I ++ N + R+ +K +
Sbjct: 279 EEEAEETSDDEPLSSEDEENEDEDITEESNLRKRKVSDKTR 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,045,111
Number of Sequences: 5004
Number of extensions: 17697
Number of successful extensions: 68
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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