Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_E23
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    30   0.21 
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    27   1.5  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    26   3.4  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   3.4  
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.5  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    26   4.5  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    25   6.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   7.9  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    25   7.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   7.9  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    25   7.9  

>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 399 DGDYAWDSSLQGYILSSFFYGYVITQIPFGILSKRFGARLFLGVGML 539
           D D  +       ++S F+  +V+   PF  L KRFGA   L   ML
Sbjct: 88  DKDLGFVGDQYNIMISIFYIPFVLCAFPFSYLYKRFGAARILPFFML 134


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 545 VDQHTHSEEQASSEPLRQNPERNLSDDITVE 453
           +++   +EE +  EPL    E N  +DIT E
Sbjct: 276 IEREEEAEETSDDEPLSSEDEENEDEDITEE 306


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 302 SNDSDRHVRPHDVSVCHSEKQHERNPV 222
           SNDSD+   P+ V VC+  + H +  +
Sbjct: 336 SNDSDKKFLPNMVDVCYCVEVHSQQTI 362


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/57 (22%), Positives = 28/57 (49%)
 Frame = +3

Query: 372 NKTSVVSTQDGDYAWDSSLQGYILSSFFYGYVITQIPFGILSKRFGARLFLGVGMLI 542
           N  +V+     D   +  +  +  ++F+ GY++ + P  +L +RF     L V ++I
Sbjct: 83  NSYAVIMGLKEDLKMEGQMYSWSGTAFYLGYLVFEFPASLLLQRFPLSKTLCVFLVI 139


>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 381 SVVSTQDGDYAWDSSLQGYILSSF 452
           S V+TQD D  W SS+  Y L+ F
Sbjct: 159 SGVATQDLDVQWVSSISWYFLNLF 182


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 215 NSALGYVHAVSRNGKRLHHEDEHVCRYRCYGQPHSSYCH 331
           +S +   +  S NG  L H+ E +   + Y + H +YCH
Sbjct: 12  SSLVSSKNMTSENG--LEHQFEELLVEKQYSEEHCAYCH 48


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 308 DHSNDSDRHVRPHDVSVCHSEKQHERNPVPSSKPAS 201
           D S++S+      D S  +SEK+   NP+P  K AS
Sbjct: 541 DESSESEESGSSSDESD-NSEKEDRSNPIPVEKRAS 575


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 420  SSLQGYILSSFFYGYVITQI-PFGILSKRFGARLFLGVGMLINSV 551
            + L  YI S   +  + ++  PFG+++  FG +  LG+G  +  +
Sbjct: 1505 TQLPSYIFSGADFALIPSRDEPFGLVAVEFGRKGTLGIGAKVGGL 1549


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 450 FFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLL 563
           F  GY+I Q+P     +R  ARL+  V   +N ++GL+
Sbjct: 76  FTCGYIIGQLPGSYALQRVPARLWFSV---MNILWGLM 110


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 215 NSALGYVHAVSRNGKRLHHEDEHV 286
           NS+LGY  +++R+ K + +  EH+
Sbjct: 92  NSSLGYAPSITRSIKSISNNTEHL 115


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 19/78 (24%), Positives = 29/78 (37%)
 Frame = +3

Query: 3   GSLLNTRCWPAHQHYVGSRASDAL*YLVRFRILHALSPFTMVSKTQGARVLVWEQPGLED 182
           G+++  RCW   +H++                   +S        Q AR+ V  Q G  D
Sbjct: 253 GAMMMERCWLGPEHFLNE--------FFTLNTHQKVSSLNYHLAFQQARINV--QQGFSD 302

Query: 183 QRSPRYTGGLGTRHWVTF 236
            R+ RY  G+    W  F
Sbjct: 303 SRAKRYFSGVKQVFWSFF 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,269,711
Number of Sequences: 5004
Number of extensions: 44668
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)