Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_E21
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    32   0.048
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    30   0.26 
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    26   4.2  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    25   9.7  

>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 32.3 bits (70), Expect = 0.048
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +2

Query: 59  AGSXVPASFRSGRFDDWK 112
           +G  +PA++RSGRFD+WK
Sbjct: 744 SGVKLPATYRSGRFDEWK 761


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 135 WSCARLRFFQSSKRPLRNEAGTXEPALSTNHLASAVLKHNY 13
           +SCA+        RPL N  G     ++TNH  S +LK+NY
Sbjct: 124 FSCAQFHLVYYMSRPLSNIFGL----IATNHSLSLLLKNNY 160


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 419 ENIEECRILIFFF*IMHKKYIKSKYITL 336
           EN     +++ FF I HK Y K+K ITL
Sbjct: 517 ENYLSAPVILVFF-ICHKLYYKTKRITL 543


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -1

Query: 191 RPPYLVSFYWFVLAVRRRSGRARGCVFSSRRSGRCGTKPGPXNPLSV 51
           +P   VS  W V+  R + GR        RR      +PGP + LSV
Sbjct: 22  KPMIRVSKQW-VVPPRPKPGRKPALDALGRRKAPIKPRPGPTSALSV 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,778
Number of Sequences: 5004
Number of extensions: 38946
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)