Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_E21
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024876-4|AAU05555.1|  825|Caenorhabditis elegans Hypothetical ...    31   0.55 
AC024876-3|AAU05556.1|  871|Caenorhabditis elegans Hypothetical ...    31   0.55 
Z99281-31|CAI79273.1|  160|Caenorhabditis elegans Hypothetical p...    28   5.1  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    28   5.1  
AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical...    27   6.7  
Z81553-4|CAB04492.2|  316|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AC024876-4|AAU05555.1|  825|Caenorhabditis elegans Hypothetical
           protein Y94H6A.5a protein.
          Length = 825

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +2

Query: 62  GSXVPASFRSGRFDDWK-KRNLAHDHSD 142
           G+ +PAS+++G+++DWK K+ +    SD
Sbjct: 687 GTWLPASYKTGKYEDWKQKQKIGFKKSD 714


>AC024876-3|AAU05556.1|  871|Caenorhabditis elegans Hypothetical
           protein Y94H6A.5b protein.
          Length = 871

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +2

Query: 62  GSXVPASFRSGRFDDWK-KRNLAHDHSD 142
           G+ +PAS+++G+++DWK K+ +    SD
Sbjct: 687 GTWLPASYKTGKYEDWKQKQKIGFKKSD 714


>Z99281-31|CAI79273.1|  160|Caenorhabditis elegans Hypothetical
           protein Y57G11C.51 protein.
          Length = 160

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 152 AVRRRSGRARGCVFSSRRSGRCGTKPGPXNPLS 54
           + RRR+GR  G   + +RS R   +P P  P S
Sbjct: 97  SARRRAGRDAGLSANPKRSPRWSPQPDPSTPSS 129


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 213 LFKKKKKTAPLPGFLLLVCACGSSSEWSCARLRF 112
           L  +  K AP  G ++ V  C S+SE   + LRF
Sbjct: 33  LVSRPNKAAPFDGRVITVSLCNSNSEPQISSLRF 66


>AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.6 protein.
          Length = 271

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 336 TMYLTQHIHIQYTLFILNV*TYNFIYL*KLSTF-KSQVY 223
           T+Y   HI+I YT++ ++   Y+  Y+  + T+ KS +Y
Sbjct: 21  TIYYIYHIYIPYTIYTIHQ-IYHIYYIYHIYTYTKSPIY 58


>Z81553-4|CAB04492.2|  316|Caenorhabditis elegans Hypothetical
           protein F56H6.4 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -3

Query: 546 QHMXNYYSYAAISFLLFKKIKQ-RQISLKFLLEIGAESERAACREYRGVQDINILFLNY 373
           QH   ++  A++ FL+   I    Q+S    L   A   R    E+ GV+D  + F+NY
Sbjct: 2   QHAKIFFVIASVKFLMILSIHNYTQMSKTCKLRTVA---RKTVMEFEGVEDFIVPFVNY 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,460,109
Number of Sequences: 27780
Number of extensions: 219524
Number of successful extensions: 528
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)