Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_E19
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...   105   3e-24
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...   105   5e-24
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   4.5  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   5.9  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   5.9  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    25   7.8  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  105 bits (252), Expect = 3e-24
 Identities = 53/105 (50%), Positives = 61/105 (58%)
 Frame = +1

Query: 97  SKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTL 276
           S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP M +C+LGD    D AK  
Sbjct: 20  SEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMSICILGDAHDLDRAKHG 79

Query: 277 NVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 411
            V  M                           SE LIKQIPR +G
Sbjct: 80  GVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLG 124



 Score = 38.3 bits (85), Expect = 6e-04
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +2

Query: 392 RFPXLLGPGLNKAGKFPGLLSHXESM 469
           + P LLGPGL+KAGKFP  +SH + +
Sbjct: 118 QIPRLLGPGLSKAGKFPSPVSHSDDL 143


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score =  105 bits (251), Expect = 5e-24
 Identities = 53/105 (50%), Positives = 61/105 (58%)
 Frame = +1

Query: 97  SKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTL 276
           S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP M +C+LGD    D AK  
Sbjct: 20  SEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMAICILGDAHDLDRAKHG 79

Query: 277 NVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 411
            V  M                           SE LIKQIPR +G
Sbjct: 80  GVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLG 124



 Score = 38.3 bits (85), Expect = 6e-04
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +2

Query: 392 RFPXLLGPGLNKAGKFPGLLSHXESM 469
           + P LLGPGL+KAGKFP  +SH + +
Sbjct: 118 QIPRLLGPGLSKAGKFPSPVSHADDL 143


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 351 FGQFLDKLFVLIQFFQSLSIHTWHIQGFSLVTML 250
           +G+F+ +LF LIQ  +   +  W +   + VT++
Sbjct: 385 YGEFVMRLFFLIQKLRKKYLSRWGVLDAAFVTVI 418


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 186  GETLVLLWVIVLQTNLKLYSLQKVTFLVLRGXEERHS 76
            G  L  LW IV+ T   L     + F VLR    +H+
Sbjct: 1184 GSKLTKLWKIVVMTVSFLVGAWLIIFYVLRKLSNKHT 1220


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 265 PRHNAAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEAL 131
           P H  A LQE   A  AA+    L+ ++NA    G +S D  +AL
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL 360


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 361 HQIFWPVS*QAFCSYSIFSKPQHPYMAHSRF 269
           HQ+F+P +  +  SY +   PQ  Y + S +
Sbjct: 415 HQVFYPPTSTSVSSYGLGKTPQPAYGSSSPY 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,743,995
Number of Sequences: 5004
Number of extensions: 30709
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)