Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_E19
(474 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 111 2e-25
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571... 111 3e-25
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235... 110 5e-25
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 110 5e-25
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 36 0.022
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 29 2.5
03_02_0221 + 6533643-6533687,6533860-6533955,6535323-6535682,653... 28 4.4
01_05_0208 - 19291953-19292552,19293027-19293134,19293231-192933... 27 7.7
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 111 bits (268), Expect = 2e-25
Identities = 53/105 (50%), Positives = 69/105 (65%)
Frame = +1
Query: 97 SKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTL 276
S++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPKM+VC+LGD QH +EA+ +
Sbjct: 20 SREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKM 79
Query: 277 NVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 411
+ M SE++IKQIPR +G
Sbjct: 80 GLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLG 124
Score = 29.9 bits (64), Expect(2) = 0.017
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 392 RFPXLLGPGLNKAGK 436
+ P LLGPGLNKAGK
Sbjct: 118 QIPRLLGPGLNKAGK 132
Score = 25.0 bits (52), Expect(2) = 0.017
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 419 LNKAGKFPGLLSHXESM 469
++K GKFP L++H ES+
Sbjct: 149 VSKRGKFPTLVTHQESL 165
>08_02_1573 +
27956351-27956409,27956411-27956630,27957000-27957150,
27957602-27957807,27957967-27958020
Length = 229
Score = 111 bits (267), Expect = 3e-25
Identities = 55/105 (52%), Positives = 67/105 (63%)
Frame = +1
Query: 97 SKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTL 276
SK+K R F ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPKM+VC+LGD QH +EA+ +
Sbjct: 38 SKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKI 97
Query: 277 NVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 411
+ M SE++IKQIPR +G
Sbjct: 98 GLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLG 142
>08_02_1568 +
27922338-27922342,27922839-27923058,27923369-27923519,
27923874-27924079,27924211-27924264
Length = 211
Score = 110 bits (265), Expect = 5e-25
Identities = 54/104 (51%), Positives = 66/104 (63%)
Frame = +1
Query: 100 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLN 279
K+K R F ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPKM+VC+LGD QH +EA+ +
Sbjct: 21 KEKNRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIG 80
Query: 280 VPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 411
+ M SE++IKQIPR +G
Sbjct: 81 LDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLG 124
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 110 bits (265), Expect = 5e-25
Identities = 52/105 (49%), Positives = 69/105 (65%)
Frame = +1
Query: 97 SKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTL 276
S++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK++VC+LGD QH +EA+ +
Sbjct: 20 SREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKLKVCMLGDAQHVEEAEKM 79
Query: 277 NVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 411
+ M SE++IKQIPR +G
Sbjct: 80 GLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLG 124
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 35.5 bits (78), Expect = 0.022
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 94 SSKDKKRNFLETVELQIGLKNYDPQK-DKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAK 270
S+ +KKRNF ETVE + L DP++ D+ G + L + ++V V + DEA+
Sbjct: 279 SANEKKRNFTETVEAHVML-GVDPRRGDQMVRGALTLPHGTGKTVRVAVFAEGPAADEAR 337
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 193 QCRRNACPSVGHSSSDQFEALQSPKS 116
Q RN PS+ H +SD F + SP S
Sbjct: 81 QKSRNLSPSISHQASDSFSPVPSPLS 106
>03_02_0221 +
6533643-6533687,6533860-6533955,6535323-6535682,
6537106-6537177,6537374-6537697
Length = 298
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 226 AFSAAVCILALQCRRNACPSVGH 158
A A VCI L+CR+ CP H
Sbjct: 110 ASRAEVCIFCLRCRQVLCPRCSH 132
>01_05_0208 -
19291953-19292552,19293027-19293134,19293231-19293344,
19293464-19293573,19293720-19293808,19293942-19294138,
19294241-19294402,19294501-19294619,19294739-19294826,
19294911-19295016,19295157-19295245,19295351-19295503,
19295631-19295723,19295823-19295889,19296217-19296329,
19296453-19296548,19297963-19298139
Length = 826
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 112 RNFLETVELQIGLKNYDPQKDKRFSGTV 195
+N++ + +GLKNY P +K +G V
Sbjct: 540 KNYISLLSATVGLKNYGPSFEKMPTGIV 567
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,327,597
Number of Sequences: 37544
Number of extensions: 198663
Number of successful extensions: 455
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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