Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_E08
(551 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 29 0.34
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 29 0.46
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 28 0.80
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 1.8
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 27 1.8
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 27 2.4
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 3.2
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 26 3.2
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51... 26 4.2
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 4.2
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit... 25 5.6
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 5.6
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 7.4
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.4
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 25 7.4
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 7.4
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 9.8
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 25 9.8
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 25 9.8
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 29.5 bits (63), Expect = 0.34
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 380 NNEPNAKRQRLDSSELSSNSTIEGTRVYVLPNGSVPCNKP 499
NN PN + RL + S+S + T+ + P S P P
Sbjct: 54 NNHPNGPQLRLQTHFFHSSSPMHATKGFRFPKSSTPLTLP 93
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 29.1 bits (62), Expect = 0.46
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 365 PPATSNNEPNAKRQRLDSSELSSNSTIEGTRVYVLPNGSVPCNKPL 502
PP++ P Q+ ++ SS S T + LP+G VP N+P+
Sbjct: 349 PPSSIQIPPPKPMQKFPANAASSESPPNATGNF-LPSGPVPANEPM 393
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 28.3 bits (60), Expect = 0.80
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +2
Query: 311 QNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNSTIEGTRVYV-LPNGSVP 487
Q+ ++S H L+IP+P P SNN N ++ SS S +++ + R + N +
Sbjct: 61 QDSSISFTHDPLHIPLPNP---SNNNDNIFHPQVHSSFHSRSASRQRRRSGLSRSNATRY 117
Query: 488 CNKPLSDLIHLVK 526
+ LSD + ++
Sbjct: 118 SRRSLSDWLETIR 130
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 230 LKAEHLIIKGFPEKIVKLNELLETS-NFQNRNLSDVHQDLNIPIPTPPATS 379
+K E + + P++ + E ++TS + N+S + + ++P+PT AT+
Sbjct: 524 IKEEEAVSENAPQQEERSFEQIKTSIHIAPENISAIEESKSVPLPTSFATT 574
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 368 PATSNNEPNAKRQRLDSSELS 430
P S+N PN KR+R SSE S
Sbjct: 490 PTRSDNPPNEKRRRTSSSENS 510
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 335 HQDLNIPIPTPPATSNNEPNAKRQRL-DSSELSSNSTIEGTRVYV 466
H D + IP+P ++ + + QRL S+++ + +E +VY+
Sbjct: 546 HPDDKLMIPSPKIVTHGDAMQEEQRLRQKSQITPDDEVELAKVYL 590
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 263 PEKIVKLNELLE-TSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSN 436
P +V+ N ++ T+ + + +D+H + + PP++ E N +L++ ++SS+
Sbjct: 390 PSFVVQNNSAVQPTTQKTSEDSTDLHTNEIPNVAQPPSSFEKENNKDTSKLENPDISSS 448
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 464 VLPNGSVPCNKPLSDLIHLVKPH 532
VLPNG+ ++D+ H VKP+
Sbjct: 523 VLPNGNYEVGVHIADVTHFVKPN 545
>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 296 ETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAK--RQRLDSSELSSNST 442
E NF+ +S Q N+P+ T N E N R+RL + +SS+++
Sbjct: 120 ENDNFRRYGVSGGIQYSNVPLINSRVTPNCESNCSNIRRRLTAHIISSDAS 170
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 25.8 bits (54), Expect = 4.2
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +2
Query: 173 NLLQVVIMGAVQDYKDSLKLKAEHLIIKGF-PEKIVKLNELLETSNFQNRNLSDVH--QD 343
+ L + + + Y L +I KG+ P V L+ + F R L+ + Q+
Sbjct: 336 SFLTIAMQAGLDAYIAIFFLSTNAVIEKGYLPFVSVAFLSLVPSVMFTMRYLALILRVQN 395
Query: 344 LNIPIPTPPATSNNEPNAKRQRLDSSELSS 433
N+P P P +NN N + ++S +S
Sbjct: 396 SNMPPPAPRPVTNNSSNNNTNQSNASNENS 425
>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 161
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +2
Query: 281 LNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNSTIEGT 454
+++L+ + +N+ + ++N+PIP P +S N R+ L+ E N GT
Sbjct: 16 VDQLIAERSMLIKNMLEDVGEINVPIPLPNVSS----NVLRKVLEWCEHHKNDLYSGT 69
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.4 bits (53), Expect = 5.6
Identities = 22/87 (25%), Positives = 40/87 (45%)
Frame = +2
Query: 263 PEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNST 442
PEK K E+L++ N + D H+ + + T +++ + + E N +
Sbjct: 535 PEKKRKFQEVLQSKNILVSSTEDSHEPVKV-------TEDSQTAIHVSKFEDLE---NKS 584
Query: 443 IEGTRVYVLPNGSVPCNKPLSDLIHLV 523
+E + L + S +KPL DLI L+
Sbjct: 585 MESEQSLQLLSESENDDKPLIDLIPLL 611
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.0 bits (52), Expect = 7.4
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 203 VQDYKDSLKLKAEHLI--IKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPAT 376
+Q LKL+ E L IK E+ L E LET +NL +++ + +
Sbjct: 320 IQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQK 379
Query: 377 SNNE 388
NN+
Sbjct: 380 LNNK 383
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 424 VIQQLNHRRNSGLCTAEWFSTLQQATQ*SY 513
V Q L H N G C+ + ST++ + SY
Sbjct: 418 VFQNLEHNINIGRCSLKKLSTIRSCSTNSY 447
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 266 EKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSN 382
E+++K EL ++ N S+++Q N+P TSN
Sbjct: 408 EELIKKEELEADTDLGLINTSEINQPANLPDEPTAETSN 446
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +1
Query: 298 DIKLSKSE--FIGRTSGFKHSNTNTTCNVK 381
D LSK+E I +T+ KH TNTT +VK
Sbjct: 738 DSGLSKTERLTIQQTNEIKHVPTNTTSSVK 767
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 353 PIPTPPATSNNEPNAKRQRLDSS 421
P PTPPA+S++ P Q + ++
Sbjct: 256 PAPTPPASSSSSPLLSSQTVKTT 278
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 272 IVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSN 382
I +LNE L+ N ++ + D+ D + PP+T N
Sbjct: 210 IHELNEHLKNVNSKHSEIDDLLPDKRSIVSLPPSTLN 246
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 24.6 bits (51), Expect = 9.8
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 296 ETSNFQNR-NLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDS 418
ETS +++ N++DV+ L + PT + S NEP LDS
Sbjct: 598 ETSFYRHMLNVADVNDSLIMIQPTLQSYSFNEPEGVPVLLDS 639
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,895
Number of Sequences: 5004
Number of extensions: 45172
Number of successful extensions: 163
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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