Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_E08
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685... 31 0.81
01_01_0660 + 5029070-5029177,5029303-5029398,5029494-5029556,502... 31 0.81
08_01_0510 + 4455805-4456637,4457837-4457912 30 1.1
09_04_0007 - 13641012-13641431,13642220-13642312,13642429-136425... 30 1.4
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 29 1.9
01_06_0356 + 28662956-28664043,28664255-28665139,28665227-286658... 29 2.5
09_04_0652 - 19227686-19227926,19229368-19232294 29 3.3
02_05_0425 - 28845707-28846189,28846262-28846403,28846496-288469... 29 3.3
03_03_0188 + 15269347-15270213 28 5.7
11_03_0175 + 11241151-11241157,11241253-11241425,11241619-112417... 27 7.5
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199... 27 7.5
01_06_0168 + 27165323-27165373,27166659-27167067,27167666-271677... 27 7.5
10_07_0134 + 13289641-13290216,13290435-13290914 27 10.0
02_05_0988 - 33340477-33340953 27 10.0
>03_05_0967 + 29265465-29266214,29267718-29267944,29268428-29268557,
29268651-29268719,29268803-29268946,29269775-29270011,
29270897-29270998,29271131-29271396,29271766-29273410,
29274449-29275018
Length = 1379
Score = 30.7 bits (66), Expect = 0.81
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Frame = +2
Query: 164 RGNNLL--QVVIMGAVQDYKDSLKLKAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVH 337
RG +L ++V G QD S L E + ++ ++ E +N QNR SDVH
Sbjct: 1056 RGGRILDDKLVTSGRKQDESRSAGLSKEAQE-RSRQNDPLRRDQGAEENNMQNRGRSDVH 1114
Query: 338 QDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNS 439
P + T +PN D + LSSNS
Sbjct: 1115 PRDENPNNSERNTRQEKPNNTH---DGNRLSSNS 1145
>01_01_0660 +
5029070-5029177,5029303-5029398,5029494-5029556,
5029836-5029913,5030446-5030614,5030797-5031180,
5031959-5032042,5032143-5032288,5032810-5033070,
5033147-5033328,5033421-5033586,5033650-5033703,
5034702-5034965,5035088-5035303,5035388-5035540,
5035630-5035827
Length = 873
Score = 30.7 bits (66), Expect = 0.81
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +2
Query: 356 IPTPPATSNNEPNAKRQRLDSSELSSNSTIEGTRVYVLPNGSVPCNKPLSDLIHLVKPHI 535
+PT TSN+ + +++D++E + NS +E V LP + + + DL +KP I
Sbjct: 377 VPTEGVTSNHLDLPEERQVDATECALNSDLERGTV-DLPESTANISTKIPDLPSQLKPEI 435
>08_01_0510 + 4455805-4456637,4457837-4457912
Length = 302
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 215 KDSLKLKAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPI 358
K S L+ E+ +KG ++I L + L N R L+DV +DL+ P+
Sbjct: 19 KLSKLLEDEYAKLKGVQQQIAFLRDELRAMNATLRVLADVEEDLDPPV 66
>09_04_0007 -
13641012-13641431,13642220-13642312,13642429-13642521,
13642607-13642671,13643495-13643565,13643644-13643682,
13644709-13645121
Length = 397
Score = 29.9 bits (64), Expect = 1.4
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +2
Query: 218 DSLKLK-AEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPN 394
++LK+K A+ L+ G P ++ NE+L S++ RNLS V + T A + +P
Sbjct: 288 EALKIKYADPLVYTG-PIRVRTGNEILRISSYLQRNLSRVTVPFLVLHGT--ADTITDPG 344
Query: 395 AKRQRLDSSELSSNSTIE 448
A QRL S S++ +I+
Sbjct: 345 AS-QRLYQSSASAHKSIK 361
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 353 PIPTPPATSNNEPNAKRQRLDSSE 424
P P PPATS P A + LD+ E
Sbjct: 81 PPPPPPATSRRPPRAPERELDTEE 104
>01_06_0356 +
28662956-28664043,28664255-28665139,28665227-28665840,
28665929-28666338
Length = 998
Score = 29.1 bits (62), Expect = 2.5
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = +2
Query: 287 ELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELS 430
EL +N Q LSD DL+ PIP NN PN R +L S+ L+
Sbjct: 161 ELANLNNLQILRLSD--NDLSGPIPQ--GLFNNTPNLSRIQLGSNRLT 204
Score = 27.9 bits (59), Expect = 5.7
Identities = 23/80 (28%), Positives = 36/80 (45%)
Frame = +2
Query: 287 ELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNSTIEGTRVYV 466
++ +N Q NLS+ IP+ TS + N +L S S+ ++ +V V
Sbjct: 431 QITSMNNLQELNLSNNTLSGTIPVEITGLTSLVKLNLANNQLVSPIPSTIGSLNQLQVVV 490
Query: 467 LPNGSVPCNKPLSDLIHLVK 526
L S+ P+S L HL K
Sbjct: 491 LSQNSLSSTIPIS-LWHLQK 509
>09_04_0652 - 19227686-19227926,19229368-19232294
Length = 1055
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 329 DVHQDLNIPIPT--PPATSNNEPNAKRQRLDSSELSSN 436
D DL++P+P+ PPA S + P AKR + + + N
Sbjct: 367 DQFLDLSLPVPSRRPPAKSVSSPPAKRNKQSLRDRNKN 404
>02_05_0425 -
28845707-28846189,28846262-28846403,28846496-28846971,
28848817-28848848,28849429-28849572,28849770-28849841,
28850281-28850296
Length = 454
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +2
Query: 254 KGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNN---EPNAKRQRLDSSE 424
+GF ++E ++ +F +R S + P PP S+ E R ++
Sbjct: 280 QGFSTPTSSVDEAMQRDSFYSRVGSTRESPAMMMPPPPPLPSSGAGREHPISRTASSKAQ 339
Query: 425 LSSNSTIEGTRVYVLPNGSVP 487
LSS+S++ R P+ +VP
Sbjct: 340 LSSSSSVAAARPPFYPSTAVP 360
>03_03_0188 + 15269347-15270213
Length = 288
Score = 27.9 bits (59), Expect = 5.7
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 290 LLETSNFQNRNLSDVHQDLNIPIPTPPA-TSNNEPNAKRQR 409
LL TS+ + +S P P PPA TSNN+P KR R
Sbjct: 56 LLHTSSSSSATMSP--SQAPPPHPPPPAPTSNNKPPKKRPR 94
>11_03_0175 +
11241151-11241157,11241253-11241425,11241619-11241702,
11242895-11242936,11243407-11243517,11245384-11245575,
11245776-11245859,11246162-11246259,11246670-11246859
Length = 326
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -1
Query: 488 RVLNHSAVHRPEFLLWL--SCWITQMS 414
R L+HS H P+FL W + W+ +S
Sbjct: 164 RKLHHSTAHLPQFLRWSFEAAWVLALS 190
>09_04_0560 -
18519024-18519145,18519330-18519435,18519671-18519907,
18521371-18521810,18523215-18525012
Length = 900
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +2
Query: 413 DSSELSSNSTIEGTRVYVLPNGSVPCNKPLSDLIHLVKPHIXELV 547
D +SS S + V LP+G PC K S LI V P E+V
Sbjct: 295 DELYISSRSML--ATVLSLPSGLPPCIKSPSKLIEQVLPFAEEIV 337
>01_06_0168 +
27165323-27165373,27166659-27167067,27167666-27167793,
27167905-27167964,27169126-27169275,27169358-27169513,
27169643-27169854,27169983-27170084,27170351-27170430,
27170515-27170939
Length = 590
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 365 PPATSNNEPNAKRQRLDSSELSSNSTIEGTRVYVLPNGSVPCNKPLSDLIH 517
PPAT+N A ++ DSSE +E R+ P+ K +S + H
Sbjct: 483 PPATTNLSAYAYHRKSDSSERELQQELEKDRMRYQPSEHFMDAKVVSHMSH 533
>10_07_0134 + 13289641-13290216,13290435-13290914
Length = 351
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +2
Query: 269 KIVKLNELLETSNFQNR--NLSDVHQDLNIPIPTPPATSNNEPNAKR 403
+++ LN ++ NR N S+++ D++ P P PP NE R
Sbjct: 217 ELINLNVKETEASCSNRSENSSEINLDISRPAPPPPPPPANESPVNR 263
>02_05_0988 - 33340477-33340953
Length = 158
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 403 TFSIWLIV*RCRWCWYWNV*ILMYV 329
T+S W RCR W W+V L+Y+
Sbjct: 78 TWSTWRTGGRCRMPWDWHVDQLVYI 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,473,102
Number of Sequences: 37544
Number of extensions: 252375
Number of successful extensions: 761
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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