Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_E07
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    77   2e-15
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    69   4e-13
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    61   1e-10
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    42   4e-05
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    42   6e-05
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos...    32   0.045
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    31   0.079
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   3.0  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    25   5.2  

>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 36/77 (46%), Positives = 52/77 (67%)
 Frame = +3

Query: 276 RSCTGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRXYGLXGLNGCGKSSLLAX 455
           RS +G L   P SRDIKI +++++F+G  L+++  +ELN G+ YGL G NG GKS+ L  
Sbjct: 61  RSASGVLTSQPMSRDIKIDSYTLSFHGRLLIENATIELNHGQRYGLLGDNGSGKSTFLES 120

Query: 456 LXRREVPIPEHIDIFHL 506
           +  R+V  PEHID + L
Sbjct: 121 VAARDVEYPEHIDSYLL 137


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 68.9 bits (161), Expect = 4e-13
 Identities = 34/70 (48%), Positives = 42/70 (60%)
 Frame = +3

Query: 309 RSRDIKIANFSITFYGSELLQDTLLELNCGRXYGLXGLNGCGKSSLLAXLXRREVPIPEH 488
           +S+DIKI    + F G  +L    L L  GR YGL G NG GKS+LL  L RRE+ IP H
Sbjct: 179 KSKDIKIDGIDLAFAGHRILTGASLTLAQGRRYGLTGRNGIGKSTLLRALSRREIAIPTH 238

Query: 489 IDIFHLTRXM 518
           I I H+ + M
Sbjct: 239 ITILHVEQEM 248



 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 354 GSELLQDTLLELNCGRXYGLXGLNGCGKSSLLAXLXRREVP 476
           G  +L+   +++      G+ G NG GKS++L  L  +  P
Sbjct: 530 GHPILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQLHP 570


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 30/76 (39%), Positives = 45/76 (59%)
 Frame = +3

Query: 285 TGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRXYGLXGLNGCGKSSLLAXLXR 464
           TG+L   P SRD+++   S++ +G  L++D+ L L  GR YGL   NG GKS+LL  +  
Sbjct: 264 TGNLLSPPNSRDLQVEKLSVSAWGKLLIKDSELNLINGRRYGLIAPNGSGKSTLLHAIAC 323

Query: 465 REVPIPEHIDIFHLTR 512
             +P P  +D + L R
Sbjct: 324 GLIPTPSSLDFYLLDR 339


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 42.3 bits (95), Expect = 4e-05
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = +3

Query: 333 NFSITFYGSELLQDTLLELNCGRXYGLXGLNGCGKSSLLAXLXRREV---PIPEHI 491
           +FS+ + G  LL  T L L  G  YG+ G NGCGKS+LL  +   +V   P P+ +
Sbjct: 449 DFSLAYGGRLLLSHTNLHLYRGHRYGVVGHNGCGKSTLLRAIGDYKVENFPSPDEV 504



 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 321 IKIANFSITFYGSEL--LQDTLLELNCGRXYGLXGLNGCGKSSLLAXLXRREVP 476
           +K+ N S T+  ++   L +  + L+      + G NG GKS+L+  L    +P
Sbjct: 692 LKMTNASYTYPNAKKKSLDNVTVGLSLSSRVAILGPNGAGKSTLIKVLIGEVIP 745


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 41.9 bits (94), Expect = 6e-05
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 318 DIKIANFSITFYGSELLQDTLLELNCGRXYGLXGLNGCGKSSLLAXLXRREVP-IPEHI 491
           D+    FS+ +    LL  T L L  GR YGL G NG GKS+L+  +   +V   P H+
Sbjct: 434 DLCNCEFSLAYGAKILLNRTRLRLKRGRRYGLCGPNGSGKSTLMRAIVNGQVEGFPTHL 492



 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 321 IKIANFSITFYGSEL--LQDTLLELNCGRXYGLXGLNGCGKSSLLAXLXRREVP 476
           IK+ + S  + G+    L D   +++      + G NG GKS+L+  L    +P
Sbjct: 673 IKVQHMSFQYPGTSKPQLNDISFQVSLSSRIAVIGPNGAGKSTLIKVLTGELLP 726


>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
           Caf16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 32.3 bits (70), Expect = 0.045
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 318 DIKIANFSITFYGSE--LLQDTLLELNCGRXYGLXGLNGCGKSSLLAXLXRREVPIPEHI 491
           ++ ++N S TF   +   L    L+L  G    L G NG GKS+LL  L  + +    HI
Sbjct: 2   EVTVSNLSYTFSPKQPLSLDHVTLDLPKGSRTLLVGANGAGKSTLLKLLSGKSLAKAGHI 61

Query: 492 DI 497
            +
Sbjct: 62  SV 63


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 31.5 bits (68), Expect = 0.079
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 321 IKIANFSITFYGSELLQDTLLELNCGRXYGLXGLNGCGKSSLLA 452
           I + + +  ++G ++L D    +  G  + L G NG GK++LLA
Sbjct: 265 ISMEHLNCVYWGRKVLSDINWTIREGERWALTGSNGSGKTTLLA 308


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 434 STPIKSX*PIXSPTIQLQESILK*LTPIESN*KVS 330
           S+P++   P+  PT+QLQ S L  L P E   KV+
Sbjct: 437 SSPVR---PMLKPTLQLQNSPLSKLVPQEVGNKVN 468


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 363 LLQDTLLELNCGRXYGLXGLNGCGKSSLLAXLXR 464
           +L      +  G      G +GCGKS++L  L R
Sbjct: 458 ILNGCSFNIPAGAKVAFVGASGCGKSTILRLLFR 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,781,645
Number of Sequences: 5004
Number of extensions: 28517
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)