Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_D23
         (379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83231-3|CAB05751.1|  247|Caenorhabditis elegans Hypothetical pr...    32   0.12 
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    29   1.5  
AF077545-1|AAC26306.2|  506|Caenorhabditis elegans Hypothetical ...    26   7.8  

>Z83231-3|CAB05751.1|  247|Caenorhabditis elegans Hypothetical
           protein F57G9.3 protein.
          Length = 247

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +2

Query: 14  FSXTKTLV*LGIREFRIMWYEILPXFFHYYCCCW 115
           ++  KT+     +++ I+ + ++  F+H+Y CCW
Sbjct: 137 YTFPKTIKLSNPQKYTILAFSVIMEFYHFYMCCW 170


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 261 LPSHSLHKDYQ*ASYPSGTTHDSIYQ*ASVYNDCLKSDYVYDKDPS 124
           LP  SLH+++Q   Y + T    +    S+YND  K D  Y+ + S
Sbjct: 19  LPPQSLHQNWQDTEYVNTTCSSDMNSDMSMYNDD-KDDPFYEDEGS 63


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 261 LPSHSLHKDYQ*ASYPSGTTHDSIYQ*ASVYNDCLKSDYVYDKDPS 124
           LP  SLH+++Q   Y + T    +    S+YND  K D  Y+ + S
Sbjct: 19  LPPQSLHQNWQDTEYVNTTCSSDMNSDMSMYNDD-KDDPFYEDEGS 63


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 261 LPSHSLHKDYQ*ASYPSGTTHDSIYQ*ASVYNDCLKSDYVYDKDPS 124
           LP  SLH+++Q   Y + T    +    S+YND  K D  Y+ + S
Sbjct: 19  LPPQSLHQNWQDTEYVNTTCSSDMNSDMSMYNDD-KDDPFYEDEGS 63


>AF077545-1|AAC26306.2|  506|Caenorhabditis elegans Hypothetical
           protein H41C03.3 protein.
          Length = 506

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 124 PGRPTAAVIMKKXRKNFVPHYSKFSYPKLHKC 29
           PG  T   + +K   +FV   S++ Y   HKC
Sbjct: 375 PGHFTDECLKQKRNTDFVSRMSQWMYGSAHKC 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,666,758
Number of Sequences: 27780
Number of extensions: 116895
Number of successful extensions: 266
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)