Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_D23
         (379 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   3.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   3.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   6.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   6.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   6.4  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   8.4  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 68  WYEILPXFFHYYCCCW 115
           +Y+ +     YY CCW
Sbjct: 475 FYDGIRDMIGYYPCCW 490


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 68  WYEILPXFFHYYCCCW 115
           +Y+ +     YY CCW
Sbjct: 528 FYDGIRDMIGYYPCCW 543


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -1

Query: 274 LSGIASKPFTS*GLPVSLISLW 209
           + G++ KP +  G  + +I++W
Sbjct: 155 VKGLSGKPLSINGALIRIIAIW 176


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -1

Query: 274 LSGIASKPFTS*GLPVSLISLW 209
           + G++ KP +  G  + +I++W
Sbjct: 121 VKGLSGKPLSINGALIRIIAIW 142


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -1

Query: 274 LSGIASKPFTS*GLPVSLISLW 209
           + G++ KP +  G  + +I++W
Sbjct: 31  VKGLSGKPLSINGALIRIIAIW 52


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 3   CHCYFPERKHLCNLGYENLE 62
           CH     R+ LC   Y+ LE
Sbjct: 317 CHAEVVARRCLCEYLYKQLE 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,581
Number of Sequences: 438
Number of extensions: 1755
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)