Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_D20
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   2.8  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    25   4.8  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   6.4  

>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 274 INSGAATQVPSLTGKEDDEMEGDQLMFDLDQGFAQGFTQE 393
           +NS  A ++  +   E D+ME D+L+  L++G  +   +E
Sbjct: 765 LNSELADKLAQIRHLESDKMELDKLVHHLNRGIEEANIEE 804


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 25  GSDIVHLFYKNYLKVVKILTVWL 93
           GS + H  YK Y  VV+ L +WL
Sbjct: 286 GSRLKHSHYKQYHYVVQSLHLWL 308


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = +1

Query: 76   ILTVWLARPRGRVHRRIV*IMSYQIPSSQSRTMSHSSYVASDVPMAPNKEQQTL---MWQ 246
            +L+  +A+P  +         SY IPSS SR    +SY +S++ +  +  + +L   +  
Sbjct: 880  VLSSTIAKPTFKFSTSNSGSTSYSIPSSSSRNEGTTSY-SSNITVTSSTLKPSLTSSVST 938

Query: 247  QNSYLVDSGINSGAATQ 297
             +SY+  S  ++  +T+
Sbjct: 939  ASSYIASSASSNTLSTE 955


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,785,138
Number of Sequences: 5004
Number of extensions: 35028
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)