Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_D20
(422 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0195 + 32256771-32258792 34 0.041
03_06_0146 - 31976538-31978643,31978653-31978751 30 0.67
10_01_0243 + 2538994-2539193,2539297-2539471,2539568-2539726,254... 28 3.6
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 27 6.2
07_01_0780 + 6047375-6047494,6047603-6047713,6047804-6047926,604... 27 6.2
06_01_0349 + 2529279-2530446,2532232-2533036,2533066-2533106,253... 27 6.2
08_02_1160 - 24793708-24794796,24794888-24794951,24795028-247951... 27 8.2
05_03_0188 + 9417186-9417306,9417418-9417604,9417669-9417801,941... 27 8.2
>03_06_0195 + 32256771-32258792
Length = 673
Score = 34.3 bits (75), Expect = 0.041
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +1
Query: 244 QQNSYLVDSGINSGAATQVPSLTGKED--DEMEGDQLMFDLDQGFAQGFTQEQVDDMNQQ 417
+ N+ VDS I+ AAT+V + +G+ED DE +GD FD + G + +++ D ++
Sbjct: 120 ESNNDHVDSNID--AATEVTTFSGEEDLDDETDGDIECFDEEDGICEENPDDEIFDDEEE 177
>03_06_0146 - 31976538-31978643,31978653-31978751
Length = 734
Score = 30.3 bits (65), Expect = 0.67
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 244 QQNSYLVDSGINSGAATQVPSLTGKED--DEMEGDQLMFDLDQGFAQGFTQEQVDDMNQQ 417
+ N+ VDS I AA + + +G+ED DE +GD FD D G + +++ D +++
Sbjct: 130 ESNNDHVDSNI---AAAEDTTFSGEEDLDDETDGDIECFDEDDGICEENPDDEIFDDDEE 186
>10_01_0243 +
2538994-2539193,2539297-2539471,2539568-2539726,
2540109-2540205,2540420-2540490,2541196-2541247,
2541778-2541826,2541965-2542102,2542653-2542772,
2542861-2542990
Length = 396
Score = 27.9 bits (59), Expect = 3.6
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 72 ENINCLACTAKGTGASSHRLN-HELSNSIIAKSHNVAQQLCCF 197
++ +C C +H LN HE+ I+ + HN LC F
Sbjct: 322 DSCSCFTCQNHTRAYLNHLLNVHEMLAQILLEIHNTHHYLCFF 364
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 274 INSGAATQVPSLTGKEDDEMEGDQ 345
I SG T VPS+ +EDDE D+
Sbjct: 682 IGSGKRTSVPSVFAEEDDEDNDDK 705
>07_01_0780 +
6047375-6047494,6047603-6047713,6047804-6047926,
6048035-6048168,6048273-6049551
Length = 588
Score = 27.1 bits (57), Expect = 6.2
Identities = 16/68 (23%), Positives = 27/68 (39%)
Frame = +1
Query: 169 TMSHSSYVASDVPMAPNKEQQTLMWQQNSYLVDSGINSGAATQVPSLTGKEDDEMEGDQL 348
T + + + +V P L W N Y S I+ ++ S+T D + D +
Sbjct: 171 TSTKNGFAPVEVSDFPTSSYHFLGWHPNDYASRSSISLSLLSETQSMTDDGCDSEQLDLM 230
Query: 349 MFDLDQGF 372
+ L GF
Sbjct: 231 LEYLHPGF 238
>06_01_0349 +
2529279-2530446,2532232-2533036,2533066-2533106,
2533219-2533424
Length = 739
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 7 MNXSDGGSDIVHLFYKNYLKVVKILTVW 90
++ DGG +++LF K L++ K+ T+W
Sbjct: 487 LSHDDGGFSLMNLFSKATLQLPKLDTIW 514
>08_02_1160 -
24793708-24794796,24794888-24794951,24795028-24795146,
24795496-24795612,24796365-24796406,24797342-24797506,
24797806-24797898,24798190-24798291,24798360-24798501,
24799301-24799651,24799741-24799839,24800019-24800230,
24800394-24800429
Length = 876
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +3
Query: 54 KLFKSRENINCLACTAKGTGASSHRLNHE 140
KL K + C GTGAS HRL E
Sbjct: 339 KLDKLEQKTTCGQALVYGTGASKHRLRPE 367
>05_03_0188 +
9417186-9417306,9417418-9417604,9417669-9417801,
9418673-9418752,9421940-9422011,9422211-9422282,
9422361-9422432,9422720-9422791,9423038-9423109,
9423335-9423406,9423497-9423568,9423648-9423722,
9423824-9423895,9424072-9424137,9424223-9424299,
9424642-9425021,9425112-9425310,9425380-9425538,
9425620-9425738,9425942-9426092,9426257-9426488,
9426573-9426723,9426808-9427125
Length = 1007
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = -1
Query: 245 CHINVCCSLFGAI----GTSEAT*LLCDIVRLCDDGI 147
CHIN CS +++T LCD++ L DG+
Sbjct: 98 CHINKLCSTHCLACLKESMAQSTESLCDMINLTSDGV 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,980,291
Number of Sequences: 37544
Number of extensions: 245880
Number of successful extensions: 614
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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