Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_D20
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81464-1|CAE17676.1|  131|Caenorhabditis elegans Hypothetical pr...    29   1.0  
AC084161-4|AAK29730.3|  724|Caenorhabditis elegans Hypothetical ...    28   2.4  
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass...    27   5.5  
Z81071-2|CAB03012.1|  618|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AF016422-8|AAW88392.1|  289|Caenorhabditis elegans Serpentine re...    26   9.7  

>Z81464-1|CAE17676.1|  131|Caenorhabditis elegans Hypothetical
           protein B0462.4 protein.
          Length = 131

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +1

Query: 139 SYQIPSSQSRTMSHSSYV---ASDVPMAPNKEQQTLMWQQN 252
           +Y+ PS++S T +HS ++     DVP+ P    QT  + +N
Sbjct: 39  NYRRPSTESTTSNHSIHIPVGVDDVPVLPTSTMQTPHFTKN 79


>AC084161-4|AAK29730.3|  724|Caenorhabditis elegans Hypothetical
           protein Y92H12A.2 protein.
          Length = 724

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 283 GAATQVPSLTGKEDDEM 333
           GAAT+VP L GK DDE+
Sbjct: 304 GAATRVPLLRGKTDDEI 320


>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 213 protein.
          Length = 1437

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
 Frame = +1

Query: 133 IMSYQIPSSQSRTMSHSSYVASDVPMAPNKEQ---QTLMWQQNSYLVDSGINSGAATQVP 303
           I+ Y IP +++    H S + +    A   E     ++    +    ++GI   A TQ  
Sbjct: 238 ILGYMIPKAEAIKEGHRSRMQNAQERASKAETISTASMPIMDSRGFDENGIGGNATTQTI 297

Query: 304 SLTGKEDDEMEGDQLMFDLDQGFAQGFTQEQVDDMNQQL 420
           S T          QL  D D   ++GF +E V   NQ+L
Sbjct: 298 SFTTVI-------QLQEDEDIKLSEGFNEEYVLSSNQKL 329


>Z81071-2|CAB03012.1|  618|Caenorhabditis elegans Hypothetical
           protein F28F8.2 protein.
          Length = 618

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 409 SYHQLVLE*IPEQNPDQGQT*VGHLPSHHLP 317
           +Y   +LE +PE    +GQ  VGH+ SH +P
Sbjct: 172 NYVHTMLEAMPEMR--RGQPGVGHIKSHDIP 200


>AF016422-8|AAW88392.1|  289|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 60 protein.
          Length = 289

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 149 FHHRKVAQCRTAAMLLLMCQW 211
           ++H+  + C TA +LLLMC +
Sbjct: 115 YYHKYRSHCPTATILLLMCAY 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,081,118
Number of Sequences: 27780
Number of extensions: 205098
Number of successful extensions: 509
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)