Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_D16
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 230 1e-61
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 113 2e-26
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 111 1e-25
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 109 3e-25
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 98 8e-22
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 98 1e-21
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 84 1e-17
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 46 6e-06
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 27 3.1
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 26 5.4
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 5.4
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 25 7.1
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 25 7.1
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 25 7.1
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 25 7.1
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.1
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.1
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 25 9.4
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 9.4
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 9.4
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 230 bits (563), Expect = 1e-61
Identities = 102/162 (62%), Positives = 133/162 (82%)
Frame = +2
Query: 83 MARRYDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVF 262
M+R YD+RTTIFSPEGRLYQVEYA+EAI+HAG +LGI+A DGI+LAAE++ T+KLL++
Sbjct: 1 MSRSYDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEE 60
Query: 263 FSEKIYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGESIPCEQLVSWLCDVKQA 442
+EK+Y + D+M+C+VAG+T+DAN+L N R + Q+YL + E +PCEQLV +CD+KQ
Sbjct: 61 SAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQG 120
Query: 443 YTQYGGKRPFGVSILYMGWDKHYGYQLYQSDPSGNYGGVESN 568
YTQYGG RPFGVS LY GWD GYQL+QS+PSGNYG ++N
Sbjct: 121 YTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQAN 162
Score = 33.9 bits (74), Expect = 0.020
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 537 PVETMGGWKATCIGNNSAAAVSSLKQEYKENETL 638
P G W+A IG NS + S ++QEYK++ L
Sbjct: 152 PSGNYGSWQANSIGGNSTSVQSLMRQEYKDDINL 185
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 113 bits (272), Expect = 2e-26
Identities = 66/157 (42%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Frame = +2
Query: 83 MARRYDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVF 262
M +Y T FSP G+L Q+EYA+ A++ TS+GI ATDG++LA E++ T++L
Sbjct: 1 MTDKYAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGAS 60
Query: 263 FSEKIYKLNDDMVCSVAGITSDANVLTNELRLIAQ-RYLLQYGESIPCEQLVSWLCDVKQ 439
EK+ + D+ +G+ D VL ++ R +AQ Y Y E P + LV + V Q
Sbjct: 61 L-EKVCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQ 119
Query: 440 AYTQYGGKRPFGVSILYMGWDKHYGYQLYQSDPSGNY 550
TQ GG RPFGVS+L G D+ G LYQ DPSG Y
Sbjct: 120 ESTQSGGVRPFGVSLLVAGMDEK-GPSLYQVDPSGTY 155
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 111 bits (266), Expect = 1e-25
Identities = 59/158 (37%), Positives = 92/158 (58%), Gaps = 6/158 (3%)
Frame = +2
Query: 95 YDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEK 274
YD FSPEGRL+QVEYA+EAI T++G+ D ++L E+R T+ L+ E EK
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLM-ESHSVEK 66
Query: 275 IYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQ- 451
+++++ + C+++G+T+DA + R+ Q + Y E E +CD+ + +
Sbjct: 67 LFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEG 126
Query: 452 YGGK-----RPFGVSILYMGWDKHYGYQLYQSDPSGNY 550
G+ RPFGV++L G D+H G QLY S+PSG Y
Sbjct: 127 EDGEERIMSRPFGVALLIAGIDEH-GPQLYHSEPSGTY 163
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 109 bits (263), Expect = 3e-25
Identities = 56/153 (36%), Positives = 92/153 (60%), Gaps = 1/153 (0%)
Frame = +2
Query: 95 YDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEK 274
YD ++FSP+GRL QVEY EA+ T++ + + I++ ER+N KL + F +K
Sbjct: 4 YDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNF-QK 62
Query: 275 IYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQY 454
I +++ + + AG+ +DA +L ++ R+ AQ + L + + E L ++ V+Q YTQ
Sbjct: 63 IAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQS 122
Query: 455 GGKRPFGVSILYMGWDKHYGY-QLYQSDPSGNY 550
GG RPFGVS L G+D ++YQ++P+G Y
Sbjct: 123 GGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIY 155
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 537 PVETMGGWKATCIGNNSAAAVSSLKQEYKE 626
P WKAT IG S AA L++ +KE
Sbjct: 151 PAGIYNAWKATAIGRASKAAREYLEKNWKE 180
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 98.3 bits (234), Expect = 8e-22
Identities = 52/151 (34%), Positives = 89/151 (58%)
Frame = +2
Query: 92 RYDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSE 271
+YD T +SP+GRL+QVEYA+EAI ++G+++ +L A +RN +L + +
Sbjct: 5 QYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSS---YQK 61
Query: 272 KIYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQ 451
K+ +++D + ++AG+ DA VL+N ++ A + IP +L+S + + Q TQ
Sbjct: 62 KLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQ 121
Query: 452 YGGKRPFGVSILYMGWDKHYGYQLYQSDPSG 544
G+RP+GV L +G+D+ G L + PSG
Sbjct: 122 EYGRRPYGVGFLVIGYDES-GPHLLEFQPSG 151
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 97.9 bits (233), Expect = 1e-21
Identities = 51/161 (31%), Positives = 88/161 (54%), Gaps = 1/161 (0%)
Frame = +2
Query: 86 ARRYDTRTTIFSPEGRLYQVEYAMEAISHAG-TSLGILATDGILLAAERRNTNKLLDEVF 262
AR +D T+FSPEGRLYQVEYA +A ++AG TS+G+ + + ++++ +KL+D
Sbjct: 4 ARGFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDAST 63
Query: 263 FSEKIYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGESIPCEQLVSWLCDVKQA 442
++ + + C + G +DA + R A + + G +PC+ L + ++ Q
Sbjct: 64 VKH-VFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQV 122
Query: 443 YTQYGGKRPFGVSILYMGWDKHYGYQLYQSDPSGNYGGVES 565
TQ RP GV++ + D G L++ DP+G Y G ++
Sbjct: 123 STQRAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKA 163
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 84.2 bits (199), Expect = 1e-17
Identities = 50/147 (34%), Positives = 75/147 (51%)
Frame = +2
Query: 116 FSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDD 295
FSP+GRL+Q EYA +A+ +A T +GI DG++LA E+ T+KLL + + +I ++
Sbjct: 14 FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLL-KPRVNNRIGSVDRH 72
Query: 296 MVCSVAGITSDANVLTNELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQYGGKRPFG 475
+ + G D + R A + YG IP + L + Q +T Y RPFG
Sbjct: 73 IGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFG 132
Query: 476 VSILYMGWDKHYGYQLYQSDPSGNYGG 556
V +D G LY +P+G Y G
Sbjct: 133 VMSFVATYDSE-GPHLYMVEPNGVYWG 158
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 45.6 bits (103), Expect = 6e-06
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
Frame = +2
Query: 164 ISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCSVAGITSDANVLT 343
+ + GT++ I +LA + R+ N F +++++ DD+V +G +DA L
Sbjct: 10 VQNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALAL- 68
Query: 344 NELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQYGGKR--PFGVSILYMGWDKHYGY 517
++ I QR L + S C V+ T GKR P+ V G DK
Sbjct: 69 --VKRIQQRIDLYHDNHERKMSAQSCACMVR---TLLYGKRFFPYYVYTTVAGIDKEGKG 123
Query: 518 QLYQSDPSGNY 550
++Y DP G+Y
Sbjct: 124 EIYSFDPVGSY 134
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 194 LATDGILLAAERRNTNKLLDEVFFSE 271
L + GIL +R+NT L+ V++SE
Sbjct: 6 LLSKGILSIIKRKNTGNLIPHVYYSE 31
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 85 HFLYKYILFVIDMTKLIVTFVEIIFXK 5
H LYKY+LF K ++ +V F K
Sbjct: 340 HLLYKYLLFSPKFPKSLLQYVITFFSK 366
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 25.8 bits (54), Expect = 5.4
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -2
Query: 351 NSFVKTLASDVIPATEQTMSSLSL*IFSEKNTSSRSLLVFLRSA-AKRIPSVAKIPSDVP 175
NSF TL +D +P SL +F + T SR L F+R + PS + +P
Sbjct: 382 NSFDFTLENDQVPPRLIASECTSLEVFIQHITLSRILSHFVRKVYPVKSPSDSHCKVSLP 441
Query: 174 A 172
A
Sbjct: 442 A 442
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 391 FAILQQVSLSDQS*FVCQNVSIRCYTSD*TDHVIIELVDF 272
FA++ V L D V QN+ + +TS HV+ ++DF
Sbjct: 898 FAMVWLVDLEDN---VEQNIRVPIFTSSKPAHVLQNMIDF 934
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 322 CYTSD*TDHVIIELVDFFRKEHF 254
CY+ + H +LVD F K HF
Sbjct: 63 CYSCSISCHADHDLVDLFNKRHF 85
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 7.1
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Frame = +2
Query: 77 EKMARRYDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDE 256
+ R +D R+ FSP L + ++ +I A + +TDG L + R L
Sbjct: 119 DSKVRLWDCRSNSFSPIQVLADAKDSVSSIDIAEHLIVTGSTDGTLRTYDIRKGT--LSS 176
Query: 257 VFFSEKIYKLNDDMVCS---VAGITSDANVLTNELRLIAQRYL 376
+FS I + S ++ + S ++L E I + Y+
Sbjct: 177 DYFSHPITSVKTSKSASFSLISSLNSSIHLLDQETGKILKSYI 219
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 347 ELRLIAQRYLLQYGESIPCEQLVS---WLCDVKQAYTQY 454
EL + RYLLQ+G S EQ + WL + + T Y
Sbjct: 728 ELLKKSTRYLLQFGLSTSLEQQIPTPYWLAPLNLSCTDY 766
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.4 bits (53), Expect = 7.1
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = -2
Query: 429 SQSQETNCSQGIDSPYCSRYL*AISLNSFVKTLASDVIPATEQTMSSLSL*IFSEKNTSS 250
+QSQ+ N +G S S + SL S + +S P+T + SS S S + SS
Sbjct: 103 AQSQQFNIVEGAASSSSSSSSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSS 162
Query: 249 RS 244
S
Sbjct: 163 SS 164
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 560 PPPHSFHWDQTGRADNHSAYPSPYTEL 480
P HSF Q DN Y +PYT +
Sbjct: 103 PSFHSFGLPQEDSQDNTQTYSTPYTTM 129
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 267 LKKSTSSMMTWSVQSLV*HR 326
L+KS SS +TWSV HR
Sbjct: 273 LRKSISSTITWSVYEWALHR 292
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 371 YLLQYGESIPCEQLVSWLCDVKQAYTQYGGKRP 469
YL Y + + CE++ ++ D+++ Y KRP
Sbjct: 1679 YLQPYIQQLLCEEISVFVADLEKYALLYENKRP 1711
>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 283
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = -2
Query: 456 PYCV*ACFTSQSQETNCSQGIDSPY 382
PY V CF NC+ + +P+
Sbjct: 203 PYLVNTCFNGTQYPVNCNSALRTPF 227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,219
Number of Sequences: 5004
Number of extensions: 63791
Number of successful extensions: 170
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -