Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_D16
(649 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 248 2e-66
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 121 5e-28
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 116 2e-26
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 105 4e-23
AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome al... 102 3e-22
Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 97 7e-21
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 97 1e-20
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 33 0.17
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 31 0.70
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 31 0.70
U50308-5|AAG24033.2| 284|Caenorhabditis elegans Seven tm recept... 28 5.0
AL023837-3|CAB63348.2| 283|Caenorhabditis elegans Hypothetical ... 28 5.0
Z72505-4|CAA96611.1| 347|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z36752-7|CAA85329.1| 468|Caenorhabditis elegans Hypothetical pr... 27 8.7
U61955-4|AAC24407.1| 772|Caenorhabditis elegans Zygotic epiderm... 27 8.7
U61955-3|AAC24406.1| 775|Caenorhabditis elegans Zygotic epiderm... 27 8.7
U61955-2|AAM97993.1| 777|Caenorhabditis elegans Zygotic epiderm... 27 8.7
AL021493-3|CAA16390.2| 243|Caenorhabditis elegans Hypothetical ... 27 8.7
AL021472-1|CAA16299.2| 397|Caenorhabditis elegans Hypothetical ... 27 8.7
AF067949-10|AAC19239.4| 304|Caenorhabditis elegans Seven tm rec... 27 8.7
AF067949-9|AAX22283.1| 323|Caenorhabditis elegans Seven tm rece... 27 8.7
AF057568-1|AAC33438.1| 772|Caenorhabditis elegans kinesin-like ... 27 8.7
AF057567-1|AAC33437.1| 775|Caenorhabditis elegans kinesin-like ... 27 8.7
AC199171-1|ABO33269.1| 121|Caenorhabditis elegans Hypothetical ... 27 8.7
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 248 bits (608), Expect = 2e-66
Identities = 113/158 (71%), Positives = 135/158 (85%)
Frame = +2
Query: 83 MARRYDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVF 262
MARRYD+RTTIFSPEGRLYQVEYAMEAISHAGT LGIL+++GI++AAER+N +KLLD+
Sbjct: 1 MARRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSV 60
Query: 263 FSEKIYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGESIPCEQLVSWLCDVKQA 442
+EK+Y+L+D++ C+VAGIT+DAN+L N LR A Y YGE +P EQLV LC+ KQ
Sbjct: 61 MTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQR 120
Query: 443 YTQYGGKRPFGVSILYMGWDKHYGYQLYQSDPSGNYGG 556
YTQ GGKRPFGVS+LY+GWDKHYGYQLYQSDPSGNY G
Sbjct: 121 YTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTG 158
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +3
Query: 555 GWKATCIGNNSAAAVSSLKQEYK 623
GWKATCIG+N AAV+ LKQEYK
Sbjct: 158 GWKATCIGSNHQAAVTLLKQEYK 180
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 121 bits (291), Expect = 5e-28
Identities = 64/157 (40%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Frame = +2
Query: 83 MARRYDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVF 262
M Y T FSP G+L Q+EYA+ A+ + S+G+ A DG++LA E N +L +
Sbjct: 1 MGDHYGFSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKDGVVLATE--NVGSVLTDD- 57
Query: 263 FSEKIYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGESIPCEQLVSWLCDVKQA 442
K+ +++ + C +G+ D +L + R IA Y + YGE +P QLV+ + V Q
Sbjct: 58 -QPKVEQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQE 116
Query: 443 YTQYGGKRPFGVSILYMGWDKHYGYQ-LYQSDPSGNY 550
YTQ GG RPFG S+L GWDK+ G L+Q DPSG Y
Sbjct: 117 YTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAY 153
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 116 bits (278), Expect = 2e-26
Identities = 55/153 (35%), Positives = 94/153 (61%)
Frame = +2
Query: 92 RYDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSE 271
RYD TIFSP+G L+QVEYA EA+ T++G+ D I++ E+++ L D+
Sbjct: 3 RYDRAITIFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKKSIPALQDDRTI-R 61
Query: 272 KIYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQ 451
KI+ ++D ++ + AG+++DA VL + R+ Q Y L + + + ++ + KQ +TQ
Sbjct: 62 KIHMIDDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQ 121
Query: 452 YGGKRPFGVSILYMGWDKHYGYQLYQSDPSGNY 550
G+RPFG+S+L G+D +L++++PSG Y
Sbjct: 122 SPGRRPFGISMLIGGFDHDGTPRLFKTEPSGAY 154
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 105 bits (251), Expect = 4e-23
Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Frame = +2
Query: 95 YDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEK 274
YD FSPEGRL+QVEYA+EA+ TS+GI ++G+LLAAE+R+T+KL+ EK
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDAI-EK 66
Query: 275 IYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAY--- 445
I K++ + + AG+ +D+ L ++ AQ + Y I E + + ++ +
Sbjct: 67 ISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDD 126
Query: 446 -TQYGGKRPFGVSILYMGWDKHYGYQLYQSDPSGNY 550
+ RPFGV++L+ G D+ G +L+ DPSG +
Sbjct: 127 DVKASMSRPFGVAMLFAGVDQE-GAKLFHLDPSGTF 161
>AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome alpha
subunit protein 6 protein.
Length = 260
Score = 102 bits (244), Expect = 3e-22
Identities = 54/150 (36%), Positives = 87/150 (58%)
Frame = +2
Query: 92 RYDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSE 271
+YD T++SP+GRL+QVEYA+EA+ ++GI + ++ A +R N L +
Sbjct: 5 QYDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDLSSH---QK 61
Query: 272 KIYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQ 451
K+Y+++ S+AG+ SD +L L+ + Y +++P ++L + QA TQ
Sbjct: 62 KVYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQ 121
Query: 452 YGGKRPFGVSILYMGWDKHYGYQLYQSDPS 541
Y G+RPFGV IL G+DK G + Q+DPS
Sbjct: 122 YYGRRPFGVGILIAGYDKD-GAHIIQTDPS 150
>Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical
protein C15H11.7 protein.
Length = 246
Score = 97.5 bits (232), Expect = 7e-21
Identities = 49/157 (31%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
Frame = +2
Query: 95 YDTRTTIFSPEGRLYQVEYAMEAISHAG-TSLGILATDGILLAAERRNTNKLLDEVFFSE 271
+D TIFSPEGR+YQVEYA +AI+ T++ + D ++A ++R + L+ +
Sbjct: 9 FDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVTS 68
Query: 272 KIYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQ 451
+Y+++ + C G+ DA + A + + G +PCE L + D+ Q YTQ
Sbjct: 69 -VYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQ 127
Query: 452 YGGKRPFGVSILYMGWDKHYGYQLYQSDPSGNYGGVE 562
R G ++L++ +D G ++Y+ DP+G Y G++
Sbjct: 128 NAEMRSLGCALLFISYDDEKGPEVYRVDPAGYYRGMK 164
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 96.7 bits (230), Expect = 1e-20
Identities = 50/153 (32%), Positives = 89/153 (58%), Gaps = 1/153 (0%)
Frame = +2
Query: 95 YDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEK 274
YD + FSP+GR++QVEYA +A+ +AGT + I +G+++ A++ ++KL + + +
Sbjct: 8 YDLAASTFSPDGRIFQVEYAQKAVDNAGTMIAIRGKNGVVVVADKLISSKLYTD-NANPR 66
Query: 275 IYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQY 454
++ +ND++ +VAG D L N A ++L Y E +P + + + + + +T
Sbjct: 67 MFNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHT-L 125
Query: 455 GGKRPFGVSILYMGWDKHYGYQLYQSDPSG-NY 550
G RPFG +M W+K G +L+ +PSG NY
Sbjct: 126 GISRPFGAGAFFMSWNKQTGGRLFLVEPSGLNY 158
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 33.1 bits (72), Expect = 0.17
Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 2/136 (1%)
Frame = +2
Query: 149 YAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCSVAGITSD 328
Y E IS T + + G+++ + R + + KI + D+MV +G +D
Sbjct: 15 YPQEEISTGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAAD 74
Query: 329 ANVLTNELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQ--YGGKRPFGVSILYMGWD 502
+ + + Y + + + + Q + Q Y + S+L GWD
Sbjct: 75 TQAIADIAKYHIDVYTMTENKPVTIYRS-------SQIFRQFLYNYREQLSASVLVAGWD 127
Query: 503 KHYGYQLYQSDPSGNY 550
+ G Q+Y + P G +
Sbjct: 128 EELGGQVY-AIPIGGF 142
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 31.1 bits (67), Expect = 0.70
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Frame = +2
Query: 149 YAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFF-SEKIYKLNDDMVCSVAGITS 325
Y+ME G++ I + ++A++ R T ++ + +EKI LND+++ + +G
Sbjct: 47 YSMEG----GSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYG 102
Query: 326 DANVLTNELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQYGGKRPFGVSILYMGWDK 505
D VL +L+ + Q L +Y + V ++ Y P+ + G D+
Sbjct: 103 D--VL--QLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDE 158
Query: 506 HYGYQLYQSDPSG 544
H ++ DP G
Sbjct: 159 HGKGAVFSYDPIG 171
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 31.1 bits (67), Expect = 0.70
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Frame = +2
Query: 149 YAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFF-SEKIYKLNDDMVCSVAGITS 325
Y+ME G++ I + ++A++ R T ++ + +EKI LND+++ + +G
Sbjct: 47 YSMEG----GSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYG 102
Query: 326 DANVLTNELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQYGGKRPFGVSILYMGWDK 505
D VL +L+ + Q L +Y + V ++ Y P+ + G D+
Sbjct: 103 D--VL--QLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDE 158
Query: 506 HYGYQLYQSDPSG 544
H ++ DP G
Sbjct: 159 HGKGAVFSYDPIG 171
>U50308-5|AAG24033.2| 284|Caenorhabditis elegans Seven tm receptor
protein 94 protein.
Length = 284
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 142 LIQTTFRREYGCTGIITSCHFLYKYILFV 56
+I T+ YG T ++ + HF+Y+YI +
Sbjct: 89 IIIPTYCTSYGLTLVLLAIHFVYRYIAMI 117
>AL023837-3|CAB63348.2| 283|Caenorhabditis elegans Hypothetical
protein Y37H2C.4 protein.
Length = 283
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 157 HSIFDLIQTTFRREYGCTGIITSCHFLYKY 68
H I ++ T + YG + + +CHF+Y+Y
Sbjct: 42 HDITLVLLTVYSSCYGSSMSVFACHFIYRY 71
>Z72505-4|CAA96611.1| 347|Caenorhabditis elegans Hypothetical
protein C50C10.6 protein.
Length = 347
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 175 RMTYSFHSIFDLIQTTFRREYGCTGIITSCHFLYKY 68
R FH I + + +G + I +CHF+Y+Y
Sbjct: 79 RKDQHFHLISQFMAVNYCSFFGFSLAIIACHFIYRY 114
>Z36752-7|CAA85329.1| 468|Caenorhabditis elegans Hypothetical
protein F35H8.7 protein.
Length = 468
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = -3
Query: 347 RLSKR*HPMLYQRLNRPCHH*ACRFFQ----KRTLHLEVYWC 234
+LSK + Y +N PCH RF Q K+ LH+++ C
Sbjct: 141 KLSKDQYREAYGHMNIPCHPNIVRFHQAWIDKQILHIQLEMC 182
>U61955-4|AAC24407.1| 772|Caenorhabditis elegans Zygotic epidermal
enclosure defectiveprotein 4, isoform b protein.
Length = 772
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 215 LAAERRNTNK-LLDEVFFSEKIYKLNDDMVCSV 310
+AA+R +T++ + D + K+ NDDMVCSV
Sbjct: 177 MAADRLSTSREITDRYCEAIKLSGYNDDMVCSV 209
>U61955-3|AAC24406.1| 775|Caenorhabditis elegans Zygotic epidermal
enclosure defectiveprotein 4, isoform a protein.
Length = 775
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 215 LAAERRNTNK-LLDEVFFSEKIYKLNDDMVCSV 310
+AA+R +T++ + D + K+ NDDMVCSV
Sbjct: 177 MAADRLSTSREITDRYCEAIKLSGYNDDMVCSV 209
>U61955-2|AAM97993.1| 777|Caenorhabditis elegans Zygotic epidermal
enclosure defectiveprotein 4, isoform c protein.
Length = 777
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 215 LAAERRNTNK-LLDEVFFSEKIYKLNDDMVCSV 310
+AA+R +T++ + D + K+ NDDMVCSV
Sbjct: 177 MAADRLSTSREITDRYCEAIKLSGYNDDMVCSV 209
>AL021493-3|CAA16390.2| 243|Caenorhabditis elegans Hypothetical
protein Y51A2B.3 protein.
Length = 243
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 494 PYTELRLQRAFYLHIVCKLVSHHKARRL 411
PY EL L +I+C++V ++ RRL
Sbjct: 136 PYLELNLTETEVTYILCQIVCNYAGRRL 163
>AL021472-1|CAA16299.2| 397|Caenorhabditis elegans Hypothetical
protein Y17D7B.1 protein.
Length = 397
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 554 PHSFHWDQTGRADNH-SAYPSPYTELRLQRAFYLHIVCKLVSHHKARRL 411
PH+F G+ + PY EL L +I+C++V ++ RRL
Sbjct: 267 PHTFENVFGGKMIRYFDIIVKPYLELNLSETEVTYILCQIVWNYAGRRL 315
>AF067949-10|AAC19239.4| 304|Caenorhabditis elegans Seven tm
receptor protein 180,isoform a protein.
Length = 304
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 154 SIFDLIQTTFRREYGCTGIITSCHFLYKY 68
+I +I + YGC+ I + HF+Y+Y
Sbjct: 70 TIMKVINSVVSGCYGCSSSILAIHFMYRY 98
>AF067949-9|AAX22283.1| 323|Caenorhabditis elegans Seven tm
receptor protein 180,isoform b protein.
Length = 323
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 154 SIFDLIQTTFRREYGCTGIITSCHFLYKY 68
+I +I + YGC+ I + HF+Y+Y
Sbjct: 89 TIMKVINSVVSGCYGCSSSILAIHFMYRY 117
>AF057568-1|AAC33438.1| 772|Caenorhabditis elegans kinesin-like
protein ZEN-4b protein.
Length = 772
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 215 LAAERRNTNK-LLDEVFFSEKIYKLNDDMVCSV 310
+AA+R +T++ + D + K+ NDDMVCSV
Sbjct: 177 MAADRLSTSREITDRYCEAIKLSGYNDDMVCSV 209
>AF057567-1|AAC33437.1| 775|Caenorhabditis elegans kinesin-like
protein ZEN-4a protein.
Length = 775
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 215 LAAERRNTNK-LLDEVFFSEKIYKLNDDMVCSV 310
+AA+R +T++ + D + K+ NDDMVCSV
Sbjct: 177 MAADRLSTSREITDRYCEAIKLSGYNDDMVCSV 209
>AC199171-1|ABO33269.1| 121|Caenorhabditis elegans Hypothetical
protein VY35H6BL.2 protein.
Length = 121
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 507 CLSQPIYRIETPKGLLPPYCV*ACFTSQSQETNCSQGIDSPYCSR 373
CL + +R K P C+ +C+ + E+NC +G+ C +
Sbjct: 50 CLFKTHHRRGGDKDGSAPECIESCWMVEWIESNCKEGVTRKPCQK 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,991,541
Number of Sequences: 27780
Number of extensions: 359032
Number of successful extensions: 1044
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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