Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_D14
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    28   1.1  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    27   1.5  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    26   4.5  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    26   4.5  
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    25   5.9  
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    25   7.8  

>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/66 (24%), Positives = 26/66 (39%)
 Frame = -1

Query: 352 YFFPQANKHQFSISFYKLSYEHIFFTRHINL*SFIRLRIPANCFVFEEVLVWGATSFTVH 173
           YF    N    S + Y  + E +   +H    +      P   F F+ + +W AT F+  
Sbjct: 114 YFNENDNAFLISTNAYSAAQERLHIWKHEYQEALSLHPSPTERFTFD-LYIWSATVFSSR 172

Query: 172 CFHKEM 155
           CF   +
Sbjct: 173 CFSSNL 178


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 10/89 (11%)
 Frame = +2

Query: 197 PDQYLLKNETVCWDSQTNETSQ-INMPCKKYV--FIRKFI--ERDGKLVL-----ISLGK 346
           PD +   +ET+C  SQ + +SQ I   C  ++     +F+    DGKL        S  K
Sbjct: 322 PDMFSRPSETICLSSQVDSSSQCIPATCLSFIPENNMEFLVGAEDGKLQRGYRSDYSETK 381

Query: 347 EIGPLNVSFCINDVAIGERRLKLSIIQNV 433
            + P NVS+  ++V I    +  S  QNV
Sbjct: 382 AVQPSNVSYEGHNVFISGIDVMTSNSQNV 410


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 379 NAKTNIQWPYFFPQANKHQFSISFYKLSYEHIFFTR 272
           N  TN +  YF   A+ H F+++ YK S ++  F++
Sbjct: 126 NVTTNAK-KYFSSLADGHNFTLTLYKFSLDNQTFSQ 160


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 360 SGPISFPKLIST-NFPSLSINFLMNTY 283
           SG  SF K+I+   FPS  INF+ + Y
Sbjct: 91  SGGKSFAKVINCLRFPSFLINFIFSVY 117


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -2

Query: 477 KTVSFGSISVAHXTATFWIIDNLRRLSPI--ATSLMQKLTFSGPISFPKL 334
           K V  G+++       F II  L  L  +  A SL +KLT    I+FP+L
Sbjct: 257 KKVDCGNVTFPTHHTVFSIISALGYLGDVSSAVSLSRKLTSVYKINFPEL 306


>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 237 SQQTVSFLRRYWSG 196
           S+Q  SFL++YW G
Sbjct: 293 SEQNTSFLQKYWKG 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,028
Number of Sequences: 5004
Number of extensions: 49237
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)