Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_D13
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    27   2.5  
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|...    26   3.2  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    25   5.7  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    25   5.7  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   7.5  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   9.9  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    25   9.9  

>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 458 CPLASTPEDQHLLDAEMAEXLKAGV 532
           CPL  TP+ +HL+D ++   +K GV
Sbjct: 206 CPL--TPDTEHLVDEKLLASMKKGV 228


>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
           Pef1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -3

Query: 554 PNQSHRITRQLLKXQPFRHPTDVDPPVLKPADILLLXXRGLXRARPF 414
           P+Q    T+QLLK   F H   V    LKP + LL+  RG  +   F
Sbjct: 100 PSQVKNFTQQLLKGISFCHENRVLHRDLKPQN-LLINSRGELKLADF 145


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 175 IVLFLFDKNHFDRPLALKILYTEM 104
           I+LF  + NH+ RPL L ++   M
Sbjct: 434 IILFGINDNHYTRPLVLVLILAGM 457


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 376 PASQSIGGHALGSNIRFHFPHLRLFQSREDG 284
           P S    G ALG   R+  PHLR    RE G
Sbjct: 161 PVSSRASG-ALGEKGRYIAPHLRAGSGRESG 190


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 239 EQLFENQKFNYVTKNLHPM-TSDCV 168
           +QLF+NQ FN + K   PM T+D V
Sbjct: 129 QQLFKNQIFNTMEKGSPPMSTTDFV 153


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 88  VTDDSSFQCIKFLTLVVCRSDFYRTKTTQS 177
           +T D +  C++ L  +VC  D   T+T QS
Sbjct: 525 ITVDEAVICLERLVDLVCHQDQQATQTPQS 554


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 225 KSKVQLRHKKFTPNDF*LCCFCSIKI 148
           K  +Q +HKK   NDF L  F  ++I
Sbjct: 103 KEPIQAKHKKNVENDFLLQRFRKVRI 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,271,605
Number of Sequences: 5004
Number of extensions: 44495
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)