Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_D13
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0068 - 13021090-13021197,13021319-13021354,13022245-130223...    31   0.62 
12_02_0585 + 20824752-20825954,20826141-20826329,20826533-208266...    29   2.5  
07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960...    29   2.5  
03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588...    29   2.5  
09_06_0261 - 21919017-21920594                                         29   3.3  
12_02_0189 + 15165485-15168694                                         28   4.4  
02_02_0597 - 11996350-11996483,11997511-11997604,11997877-119980...    28   5.8  
06_01_0130 - 1010901-1011932,1012627-1012913,1013516-1013606           27   7.6  

>07_03_0068 -
           13021090-13021197,13021319-13021354,13022245-13022322,
           13022412-13022514,13022732-13022817,13023036-13023090,
           13023186-13023250,13023997-13024086,13024415-13024530,
           13024701-13024710
          Length = 248

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 321 SHIFACFNHAKMGNWQPLAAVTFVSGTRTVIRKSKVQL 208
           +H+  C   +  GNW+ +  + F+ G + V  K K+Q+
Sbjct: 139 AHLQLCIESSSNGNWRSIWTLEFIDGLQLVEIKGKIQV 176


>12_02_0585 +
           20824752-20825954,20826141-20826329,20826533-20826690,
           20826913-20827009,20827368-20827730,20829225-20829303,
           20830180-20830286
          Length = 731

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 232 NCSCTANKGHGGQWLPISHLRVIE 303
           +C C  +KG   + +P+ HLR+++
Sbjct: 557 DCKCEQHKGWSNEMIPLDHLRMVD 580


>07_03_1651 -
           28395369-28395436,28395524-28395575,28395857-28396092,
           28396362-28396419,28396509-28396577,28396686-28396791,
           28397104-28397171,28397266-28397385,28398144-28398231,
           28399433-28399534,28399699-28399757,28399866-28400003,
           28400222-28400473,28400508-28400593,28401061-28401165,
           28402351-28402516
          Length = 590

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -2

Query: 354 DTLWDPISDSTSHIFACFNHAKMGNWQPLAAVTFVSGTRTVIRKSKVQL-RHKKFTPN 184
           DT++DP++ S  HI+ C+  +        A+VT V G ++  RKSK  L R     PN
Sbjct: 204 DTVFDPVALSCGHIY-CYLCSCSA-----ASVTIVDGLKSAERKSKCPLCRQAGVFPN 255


>03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,
            5882570-5882618,5882703-5882941,5883073-5883174,
            5883634-5883862
          Length = 1529

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 305  QAKMWEVESDIGSQSVSSDGLRRRQGWDPDAXSLASQMDELD 430
            Q +     SD+ + S +S     +QG D DA   +S+M  LD
Sbjct: 966  QGQRASTPSDVATSSTNSQNQETKQGGDSDAGLASSEMVNLD 1007


>09_06_0261 - 21919017-21920594
          Length = 525

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
 Frame = +1

Query: 361 WIATQARMGSRCGXPCLSNGRARXSPRXXRRRMSAG-----FNTGGSTSVGCRNG*XFKS 525
           W   + R+    G      G      R  RRR++       F+TGG  S GC +      
Sbjct: 99  WFLDERRIRDAAGLLPADGGGGEVPARVNRRRLTCAICFDVFDTGGMRSAGCSHFYCVSC 158

Query: 526 WR 531
           WR
Sbjct: 159 WR 160


>12_02_0189 + 15165485-15168694
          Length = 1069

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 347 SVSSDGLRRRQGWDPD 394
           +V S GLRRR  WDPD
Sbjct: 767 TVDSVGLRRRTAWDPD 782


>02_02_0597 -
           11996350-11996483,11997511-11997604,11997877-11998032,
           11998580-11998639,11998733-11998951,11999038-11999377,
           12001240-12001571
          Length = 444

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +2

Query: 317 WEVESDIGSQSVSSDGLRRRQGWDPDAXSLASQMDELDXVLAXXEEGCPLASTPEDQHLL 496
           +E  +   +  V    L   +GW+ D  SL S  D+    +       P  +    +HL 
Sbjct: 164 YEARAAFNNLEVRHFDLIPEKGWEIDLNSLESIADKNTTAIVIINPNNPCGNVYTYEHLS 223

Query: 497 D-AEMAEXLKAGVLSDEI 547
             AE+A  L   V++DE+
Sbjct: 224 KVAEVARKLGILVITDEV 241


>06_01_0130 - 1010901-1011932,1012627-1012913,1013516-1013606
          Length = 469

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 363 PSEDTLWDPISDSTSHIFAC 304
           P +D L+DP   S+S +F+C
Sbjct: 169 PQKDVLYDPTKSSSSGVFSC 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,095,264
Number of Sequences: 37544
Number of extensions: 312291
Number of successful extensions: 805
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)