Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_D08
(560 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb... 30 0.27
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 29 0.62
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 28 1.1
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 27 1.9
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po... 27 1.9
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 3.3
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 26 4.4
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 26 4.4
SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr... 26 4.4
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 25 5.8
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 25 5.8
>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 476
Score = 29.9 bits (64), Expect = 0.27
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Frame = -1
Query: 401 SAGIDQLKGFDN--SPKMPVADSSRPPK**QNLFSLFFE----PLQNFLNSASIFLGSFF 240
SA ID L G DN SP P ++S P + F F P + LN+AS+F+GS
Sbjct: 274 SAMIDLL-GLDNEPSPAQPQTNTSAPLAFEDDGFGDFQSSAAAPASSTLNNASLFMGS-- 330
Query: 239 TSSDSVAANFSTVFTHTSQSPSRSDRTTCTA 147
++ + A N F +PS + A
Sbjct: 331 QTASTAAKNDDDAFDDFQSAPSAKPASNTAA 361
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 28.7 bits (61), Expect = 0.62
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Frame = +1
Query: 259 IEAEFKKFCKGSKNKENRFCYYLGGLEESATGILGELS---KPLSWSMPADKICEKLKKK 429
IE + + S + +NR+ YY L E + ILG + +P MP + E +K
Sbjct: 84 IEDKLLRISSNSPSAKNRYIYYPDRLNEIPSSILGSIKSIMQPALRPMPLAMMLEPFRKS 143
Query: 430 DAQICD 447
D
Sbjct: 144 KRDSTD 149
>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 226 LSDDVKKDPKKIEAEFKK 279
L DD KDP KIEAE +K
Sbjct: 342 LGDDAIKDPTKIEAEVRK 359
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 27.1 bits (57), Expect = 1.9
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 223 TLSDDVKKDPKKIEAEFKKFCKGSKNKENRFCYYLGG 333
T + ++KK+P K+E ++ C+ YY GG
Sbjct: 285 TSTGELKKEPTKLERASEEICRAISFDVKNDVYYSGG 321
>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 388 SMPADKICEKLKKKDAQICDLRFDKQIDLN 477
S+P K+ +K + + QICD +D QIDL+
Sbjct: 175 SLPDKKLIDKYYQLNEQICD--YDVQIDLD 202
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 367 LSKPLSWSMPADKICEKLKKKDAQICDL 450
LS PL WS+ ++ E LKKKD + +L
Sbjct: 1153 LSMPL-WSLTYERYVELLKKKDEVMAEL 1179
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.8 bits (54), Expect = 4.4
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 526 NDWDEVCDGC 555
+DWD+ CDGC
Sbjct: 340 DDWDDSCDGC 349
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 4.4
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = -1
Query: 299 FFEPLQNFLNSASIF----LGSFFTSSDSVAANFSTVFTHTSQSPSRS 168
+F + +FL ++F L SFFT S + + F H + SP+RS
Sbjct: 170 WFVSVDSFLYIFTLFPIRVLISFFTLSRCIFQGLFSTFFHRNSSPNRS 217
>SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 114
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 196 VKTVEKFAATLSDDVKKDPKKIEAEFKKFCKGSK 297
+KT ++ T + + K++EAEF+KF K +K
Sbjct: 75 LKTTQEGIQTAMNGLLDQYKQLEAEFQKFQKDNK 108
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 25.4 bits (53), Expect = 5.8
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +1
Query: 4 LIQFFDNLRGILAFPXFILXVS-KFITHEFKYSSKMFKFSLFHLLFLATAVQVVLSLREG 180
LI F L + P V+ F++ F +SK + L H +FLA +L R
Sbjct: 1145 LIPFTSALIAAVVLPSVFTYVTYPFLSSIFPSASKTLMYRLMHPIFLALLGLALLGRR-- 1202
Query: 181 DCEVCVKTVEKFAATLSDDV 240
V+T K++ + DD+
Sbjct: 1203 ----FVETSSKWSQGIRDDL 1218
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -2
Query: 244 SSHHLIAWRQTSLQFSHTLR--NHLLEVIGPPAQP 146
+++++ AW F TL+ NHL ++ PP+ P
Sbjct: 142 NANYVKAWNLRKDIFDETLKQMNHLQSILHPPSNP 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,317
Number of Sequences: 5004
Number of extensions: 39252
Number of successful extensions: 125
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -