Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_D08
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0411 + 3670758-3672365                                           33   0.16 
09_04_0717 + 19706160-19706327,19707036-19707157,19707408-197075...    29   2.5  
08_02_1581 - 28004060-28004449,28004730-28004888,28004933-280050...    29   2.5  
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968...    28   4.4  
08_02_0459 + 17420156-17420976,17422291-17424199                       28   5.9  
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755     28   5.9  

>08_01_0411 + 3670758-3672365
          Length = 535

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 316 CYYLGGLEESATGILGELSKPLSWSMPADKICEKLKKKDAQICDLRF 456
           CY   G    A  +   + KP  W MP +K    +    +Q+ DLRF
Sbjct: 261 CYAKNGCAREALAVFNRMLKPHVWVMPNEKTFSSVISACSQLGDLRF 307


>09_04_0717 +
           19706160-19706327,19707036-19707157,19707408-19707510,
           19707644-19707734,19707960-19708132,19708534-19708622,
           19708995-19709085,19709272-19709361,19709807-19709854,
           19710033-19710104,19710181-19710274,19710350-19710494,
           19710809-19710951,19711601-19711751,19712276-19712449,
           19712799-19712874
          Length = 609

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 461 LSNLRSQICASFFFNFSHILSAGIDQLKGFDNSPKMPVADSSRPP 327
           LS L S +  ++F N    L AG+  ++  D S  +  + S +PP
Sbjct: 424 LSGLTS-VTRNYFENLVQTLEAGLQDVRATDQSASVSTSSSKKPP 467


>08_02_1581 -
           28004060-28004449,28004730-28004888,28004933-28005044,
           28005160-28005236,28005525-28006076
          Length = 429

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 25/93 (26%), Positives = 41/93 (44%)
 Frame = +1

Query: 103 KMFKFSLFHLLFLATAVQVVLSLREGDCEVCVKTVEKFAATLSDDVKKDPKKIEAEFKKF 282
           K+      H+  LA  VQ+  S   G  E+  K  ++F + +S  +KK+ + I +  K  
Sbjct: 52  KILASQAHHIHELAKEVQINFS---GYMEMQRKEEKRFGSMISS-LKKENQDIRSMLKIA 107

Query: 283 CKGSKNKENRFCYYLGGLEESATGILGELSKPL 381
               +  ENR C   G  ++  + IL    K L
Sbjct: 108 VTEKEAAENRLCVLKGDKDQGRSAILQIAEKGL 140


>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
            14397510-14397609
          Length = 2033

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 7/116 (6%)
 Frame = +1

Query: 127  HLLFLATAVQVVLSLREGDCEV----CVKTVEKFAATLSDDVKKDPKKIEAEFKKFCKGS 294
            + ++L   +   L+L E D  +    C +   +  + ++   +KD + +EAE K      
Sbjct: 1442 YFIYLIEILSAQLALSEFDLNINKSICQELASELESCMAQLSQKDDELLEAEDKVHLLQG 1501

Query: 295  KNKENRFCYYLGGLE---ESATGILGELSKPLSWSMPADKICEKLKKKDAQICDLR 453
            KN+E   C  +G L+   E A  +  EL K ++       + E+   KD +I  LR
Sbjct: 1502 KNRE--LCGVVGSLQVAIEGAKIVKEELEKKIT------TLTEEGNTKDGEISLLR 1549


>08_02_0459 + 17420156-17420976,17422291-17424199
          Length = 909

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 385 NLRALTILPKCRWLTLRDLLNSNKIYFLCSLNLYRT 278
           +LR L+    CRWL  + L N  K++ L  LNL +T
Sbjct: 571 HLRVLSF-QGCRWLQSQHLANIGKLFQLRFLNLRKT 605


>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
          Length = 482

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -1

Query: 287 LQNFLNSASIFLGSFFTSSDSVAANFSTVFTHTSQSPSRSD 165
           L+NFL  AS   G+  +  D V    STV      SP  SD
Sbjct: 292 LENFLREASEEFGNDISYDDGVPGPSSTVVLTELHSPGESD 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,701,173
Number of Sequences: 37544
Number of extensions: 225314
Number of successful extensions: 542
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)