Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_D04
(631 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c... 143 2e-35
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe... 84 2e-17
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 28 0.97
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 28 1.3
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 27 3.0
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi... 26 3.9
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 26 5.2
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 5.2
SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr 2... 25 6.8
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 6.8
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 25 6.8
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 25 9.0
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 9.0
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 25 9.0
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 25 9.0
>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 291
Score = 143 bits (346), Expect = 2e-35
Identities = 66/158 (41%), Positives = 99/158 (62%)
Frame = +2
Query: 92 DTCLSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCE 271
+T L+N K F+ + +G RLDGR ++ R L+I FG EYG VS G T++++ +T E
Sbjct: 6 ETSLNN--KEFVLNSLEKGLRLDGRQLSDFRSLEIQFGKEYGQVDVSFGHTRVMARITTE 63
Query: 272 VAQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLC 451
+ +P RP +GI I EL P+A FEA R +D + + RL+EK + S +D ESLC
Sbjct: 64 ITKPYTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRRSNALDTESLC 123
Query: 452 IVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHF 565
I+ +K W +R ++ +NHDGNL + A IA +A++ HF
Sbjct: 124 IISGQKCWHVRASVHFINHDGNLVDAACIAVIAALCHF 161
>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 83.8 bits (198), Expect = 2e-17
Identities = 45/150 (30%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Frame = +2
Query: 116 KNFIQKIVSQGHRLDGRNFNETRKLDIS---FGSEYGCCIVSLGETKILSEVTCEVAQPK 286
+ ++ +++Q R DGR+ +E R++ I+ + G I+ GE + + E+A+P
Sbjct: 23 EQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIAEPF 82
Query: 287 QIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEE 466
+ PNEG I N+EL+P+ + +F+ +DL + + L + + S I+L+SLCI ++
Sbjct: 83 ENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSLCIFEKK 142
Query: 467 KVWSLRINIKVLNHDGNLTECASIATLASI 556
W L +I LN+DG+ + A A A++
Sbjct: 143 AAWVLYADIICLNYDGSAFDYAWAALFAAL 172
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 28.3 bits (60), Expect = 0.97
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -2
Query: 297 GLICFG*ATSHVTSDRIFVSPKDTI 223
GLI F AT+H ++ + F+ PKDT+
Sbjct: 203 GLIAFRKATAHQSAMKEFLKPKDTL 227
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 35 YASLNRIFTKKYEPXNKMRDTC--LSNCEKNFIQKIV 139
Y SLNRIFT+ EP + + D+ KNFI +V
Sbjct: 261 YYSLNRIFTRYGEPSSLVGDSANKYRAFAKNFITNVV 297
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 389 LVRLLEKCYKDSKCIDLESLCIVVEEKVWSLRINIKVLN 505
LVR+L K D + + +++LC +V + + I I ++N
Sbjct: 1014 LVRMLGKSNGDLRAVIMDTLCAIVSQLGYDYSIFIPMVN 1052
>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
Tim44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 427
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +2
Query: 275 AQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSK 427
A +I+PNE + + V NP + E + V ++ L+K Y++S+
Sbjct: 189 ASSARIQPNEDVQSVVVHSNPSWKNKVEQIKNESRLVRKIQELKKSYQESE 239
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 66 NMNQXTKCVILVYRIVKRISYKRS-YLKDIAWTV 164
++N C+I+ I++ + YK S + +IAW +
Sbjct: 203 SINPSASCLIMTTEILRAMLYKNSEIMHEIAWVI 236
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.8 bits (54), Expect = 5.2
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -2
Query: 594 HHLL*SQVSXKCAIEASVAILAHSVKLPSWFRTLILILKDQTFSSTTMQSDSRSMH 427
H L S V C +IL HS+ LP RT I + Q S + SMH
Sbjct: 468 HQLYDSDVMD-CCFSFLASILTHSIALPRLLRTKIDLCTLQISLSNPTSTVLISMH 522
>SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr
2|||Manual
Length = 85
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 14 ITHLFARYASLNRIFTKKYE-PXNKMRDTCLS 106
+ L ARY + FT KYE N+ RDT S
Sbjct: 11 LEQLQARYVGVGNAFTTKYEWMVNQHRDTLSS 42
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 210 NMVAVLCLWEKRRSYQKSHVKSLSQNK*DQMKASYLLMLN 329
N A L +W K +S ++ H S +K ++ K YLL N
Sbjct: 65 NGKACLRVWLKHKSRKRYHGYMTSTDKDEEEKNDYLLKSN 104
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 388 SCKIIRKMLQRFKMHRPGITL 450
SCK +R + + F+ RPGI+L
Sbjct: 292 SCKQVRFVYETFRRMRPGISL 312
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 25.0 bits (52), Expect = 9.0
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +2
Query: 83 KMRDTCLSNCEKNFIQKIVSQGH 151
K++ TC+ + +K FIQ + G+
Sbjct: 482 KLKQTCIEDEDKRFIQACIDAGY 504
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = +2
Query: 215 GCCIVSLG--ETKILSEVTCEVAQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTV 385
GC I S E K + V C + K +RP ++ +NP+ N D V
Sbjct: 1721 GCLITSTSAAEKKSIFLVCCSIVGDKSVRPFFKAFLLDKVINPLVFKSCGENNFIDKDV 1779
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 382 CLSCKIIRKMLQRFKMHRP 438
CL+C II++ L+R K+ P
Sbjct: 580 CLACAIIQRSLERKKLSTP 598
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 382 CLSCKIIRKMLQRFKMHRP 438
CL+C II++ L+R K+ P
Sbjct: 580 CLACAIIQRSLERKKLSTP 598
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,002
Number of Sequences: 5004
Number of extensions: 52479
Number of successful extensions: 138
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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