Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_D04
(631 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-15|AAC48298.2| 434|Caenorhabditis elegans Hypothetical p... 139 2e-33
Z92838-10|CAB07412.2| 312|Caenorhabditis elegans Hypothetical p... 44 7e-05
Z92832-9|CAB07377.2| 312|Caenorhabditis elegans Hypothetical pr... 44 7e-05
U00033-16|AAM29690.1| 65|Caenorhabditis elegans Hypothetical p... 40 0.001
U39999-1|AAK93855.1| 277|Caenorhabditis elegans Hypothetical pr... 32 0.29
AF003390-1|AAB54271.2| 473|Caenorhabditis elegans Hypothetical ... 31 0.90
AC092690-2|AAK73855.2| 745|Caenorhabditis elegans Hypothetical ... 29 2.1
Z81147-3|CAB03530.1| 305|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z81520-1|CAB04223.1| 399|Caenorhabditis elegans Hypothetical pr... 28 4.8
U97001-6|AAB52257.2| 374|Caenorhabditis elegans Hypothetical pr... 28 4.8
AY373340-1|AAQ76550.1| 1007|Caenorhabditis elegans BAM-2 protein. 27 8.4
AC024853-1|AAO21419.1| 1007|Caenorhabditis elegans Branching abn... 27 8.4
>U00033-15|AAC48298.2| 434|Caenorhabditis elegans Hypothetical
protein F37C12.13a protein.
Length = 434
Score = 139 bits (336), Expect = 2e-33
Identities = 61/160 (38%), Positives = 107/160 (66%)
Frame = +2
Query: 86 MRDTCLSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVT 265
MR ++NCEK I + + G R D R+ E R + + G+E G I ++G TK+++ V+
Sbjct: 1 MRVQPVTNCEKAVILEALKIGKRFDFRSLEEFRDVKLVVGAEVGTAICTIGNTKVMAAVS 60
Query: 266 CEVAQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLES 445
E+A+P +RP++G+I I+V+L+PMA E +R + L+RLLE +DS+CID+E+
Sbjct: 61 AEIAEPSSMRPHKGVINIDVDLSPMANYANEHDRLGSKGMELIRLLELIIRDSRCIDVEA 120
Query: 446 LCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHF 565
LCI +++W +R+++++L+ DG+L +CA +A + ++ HF
Sbjct: 121 LCIRAGKEIWKIRVDVRILDEDGSLLDCACLAAITALQHF 160
>Z92838-10|CAB07412.2| 312|Caenorhabditis elegans Hypothetical
protein F31D4.1 protein.
Length = 312
Score = 44.4 bits (100), Expect = 7e-05
Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 10/163 (6%)
Frame = +2
Query: 101 LSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFG---SEYGCCIVSLGETK-ILSEVTC 268
LS+ EK F+ R DGR+ + R++ + G G C V LG+T +L+ +
Sbjct: 5 LSDDEKLFLITGAEANIRNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKL 64
Query: 269 EVAQ---PKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDL 439
E+ + P + I F NV+ + A+ QF + L + Y SK +D+
Sbjct: 65 ELESYDAETEKEPKQPINF-NVDFSANASSQFAGKGGDEYAEELSAAFQAAY--SKALDI 121
Query: 440 E---SLCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIA 559
+ + + W + ++I VL DG++++ SIA + +++
Sbjct: 122 MPNLAKTQLADGYRWKINVDISVLQWDGSVSDAISIAIIGALS 164
>Z92832-9|CAB07377.2| 312|Caenorhabditis elegans Hypothetical
protein F31D4.1 protein.
Length = 312
Score = 44.4 bits (100), Expect = 7e-05
Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 10/163 (6%)
Frame = +2
Query: 101 LSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFG---SEYGCCIVSLGETK-ILSEVTC 268
LS+ EK F+ R DGR+ + R++ + G G C V LG+T +L+ +
Sbjct: 5 LSDDEKLFLITGAEANIRNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKL 64
Query: 269 EVAQ---PKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDL 439
E+ + P + I F NV+ + A+ QF + L + Y SK +D+
Sbjct: 65 ELESYDAETEKEPKQPINF-NVDFSANASSQFAGKGGDEYAEELSAAFQAAY--SKALDI 121
Query: 440 E---SLCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIA 559
+ + + W + ++I VL DG++++ SIA + +++
Sbjct: 122 MPNLAKTQLADGYRWKINVDISVLQWDGSVSDAISIAIIGALS 164
>U00033-16|AAM29690.1| 65|Caenorhabditis elegans Hypothetical
protein F37C12.13b protein.
Length = 65
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +2
Query: 86 MRDTCLSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETK 247
MR ++NCEK I + + G R D R+ E R + + G+E G I ++G TK
Sbjct: 1 MRVQPVTNCEKAVILEALKIGKRFDFRSLEEFRDVKLVVGAEVGTAICTIGNTK 54
>U39999-1|AAK93855.1| 277|Caenorhabditis elegans Hypothetical
protein F41G3.14 protein.
Length = 277
Score = 32.3 bits (70), Expect = 0.29
Identities = 33/150 (22%), Positives = 69/150 (46%), Gaps = 3/150 (2%)
Frame = +2
Query: 116 KNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCEVAQPKQIR 295
+ + + +G DGR + +KL G E G S+ T+ ++ V+C + +
Sbjct: 12 RGYFATFIKEGVYPDGRGLLDEQKLVFKQG-ECGGVGSSVVSTQGVT-VSCSIQASVSLV 69
Query: 296 PNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCY---KDSKCIDLESLCIVVEE 466
+ ++ I +E + + E + + +V L C+ ++ +C+D+ + +E
Sbjct: 70 SDAPLVDIKIEGSQQLS---EKDAEDCNSVLLSLFTNNCFVRRENLRCLDVCGKPLPLE- 125
Query: 467 KVWSLRINIKVLNHDGNLTECASIATLASI 556
W L I +KVL+ +GN + A A A++
Sbjct: 126 --WQLHIIVKVLSLEGNFLDAAVCALGAAL 153
>AF003390-1|AAB54271.2| 473|Caenorhabditis elegans Hypothetical
protein R155.1a protein.
Length = 473
Score = 30.7 bits (66), Expect = 0.90
Identities = 18/63 (28%), Positives = 36/63 (57%)
Frame = +2
Query: 134 IVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCEVAQPKQIRPNEGII 313
IV GH L G F+ET DI++ + + CI++L ++ +V +P+ ++P++ +
Sbjct: 95 IVFLGHLLIGYWFHETDTYDITWTTPF--CIMTLRFIGLVMDVYDGAQKPEHLKPDQKLT 152
Query: 314 FIN 322
I+
Sbjct: 153 AIS 155
>AC092690-2|AAK73855.2| 745|Caenorhabditis elegans Hypothetical
protein BE0003N10.1 protein.
Length = 745
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 146 GHRLDGRNFNETRKLDIS---FGSEYGCCIVSLGETKILSEVT 265
G R DGR +E R + I + +GC I G+T+++S VT
Sbjct: 332 GIRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVT 374
>Z81147-3|CAB03530.1| 305|Caenorhabditis elegans Hypothetical
protein T09E11.3 protein.
Length = 305
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 401 LEKCYKDSKCIDLESLCIVVEEKVWS 478
L+KC ++++C D S I + EKV+S
Sbjct: 132 LDKCVRENRCYDCGSNMICIVEKVYS 157
>Z81520-1|CAB04223.1| 399|Caenorhabditis elegans Hypothetical
protein F31B9.1 protein.
Length = 399
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 537 ILAHSVKLPSWFRTLILILKDQTFSS 460
IL HSV+LP W R L+ +L + S+
Sbjct: 300 ILDHSVQLPQWLRLLLNVLSVMSSST 325
>U97001-6|AAB52257.2| 374|Caenorhabditis elegans Hypothetical
protein K08B12.1 protein.
Length = 374
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 459 TTMQSDSRSMHFESL*HFSNNLTR*TVRSVCLLASNCG 346
T Q + ++MH+ L H+ NN+ + +VC +A + G
Sbjct: 303 TAAQYNRQAMHYRYLVHYDNNMGKGDGFNVCSVADDLG 340
>AY373340-1|AAQ76550.1| 1007|Caenorhabditis elegans BAM-2 protein.
Length = 1007
Score = 27.5 bits (58), Expect = 8.4
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 224 IVSLGETK-ILSEVTCEVAQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTV 385
++ + TK ILS+V + A PKQI + I VE N F N +TD TV
Sbjct: 644 VLDIQNTKAILSKVWLKFALPKQINQAQRI----VEFNSHRETLFNINLETDGTV 694
>AC024853-1|AAO21419.1| 1007|Caenorhabditis elegans Branching
abnormal protein 2 protein.
Length = 1007
Score = 27.5 bits (58), Expect = 8.4
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 224 IVSLGETK-ILSEVTCEVAQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTV 385
++ + TK ILS+V + A PKQI + I VE N F N +TD TV
Sbjct: 644 VLDIQNTKAILSKVWLKFALPKQINQAQRI----VEFNSHRETLFNINLETDGTV 694
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,981,804
Number of Sequences: 27780
Number of extensions: 288677
Number of successful extensions: 766
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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