Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_D03
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    47   1e-06
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    47   1e-06
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    29   0.31 
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    28   0.94 
SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit L3...    25   6.7  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.7  

>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 47.2 bits (107), Expect = 1e-06
 Identities = 24/53 (45%), Positives = 29/53 (54%)
 Frame = +2

Query: 170 KVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 328
           +++WTVLYRR  KKG  EE               IVGA+L  I  KRN +PEV
Sbjct: 48  RLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100



 Score = 31.9 bits (69), Expect = 0.058
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 58  TKYIQAMARPWXKVDGKTFTFLNSKCEAAHLMRRNPR 168
           +K      R + + D K F F+N K E+  L R+NPR
Sbjct: 11  SKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPR 47



 Score = 31.1 bits (67), Expect = 0.10
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 27 MKIGLCAYSGYKIYPGHGK 83
          MK+ +C++SG K+YPG G+
Sbjct: 1  MKVEVCSFSGSKVYPGAGR 19


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 47.2 bits (107), Expect = 1e-06
 Identities = 24/53 (45%), Positives = 29/53 (54%)
 Frame = +2

Query: 170 KVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 328
           +++WTVLYRR  KKG  EE               IVGA+L  I  KRN +PEV
Sbjct: 48  RLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100



 Score = 31.9 bits (69), Expect = 0.058
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 58  TKYIQAMARPWXKVDGKTFTFLNSKCEAAHLMRRNPR 168
           +K      R + + D K F F+N K E+  L R+NPR
Sbjct: 11  SKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPR 47



 Score = 31.1 bits (67), Expect = 0.10
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 27 MKIGLCAYSGYKIYPGHGK 83
          MK+ +C++SG K+YPG G+
Sbjct: 1  MKVEVCSFSGSKVYPGAGR 19


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 100 DGKTFTFLNSKCEAAHLMRRNPR 168
           D K F F  SKC     M+RNPR
Sbjct: 25  DSKVFRFCRSKCHKNFKMKRNPR 47


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -2

Query: 123 QECEGFSIHFXP-WSCHGLDI 64
           Q  +G S+H+ P W CHGL I
Sbjct: 111 QLLKGRSVHYVPGWDCHGLPI 131


>SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit
           L31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 155 GGILXKVTWTVLYRRKFKKGQ 217
           GG++ KV W +  RRK++  Q
Sbjct: 13  GGLVHKVPWRLSQRRKYRHRQ 33


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 366 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 271
           +  L ACS C + TS       I S S AP++
Sbjct: 105 YFTLQACSTCTISTSSLSYSGTISSTSIAPSM 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,669,119
Number of Sequences: 5004
Number of extensions: 28999
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)