Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_D03
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962...    37   0.008
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731...    37   0.008
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689...    36   0.019
04_03_0395 - 15356255-15356292,15356507-15356620,15356728-153568...    31   0.54 
03_05_0593 - 25959013-25959789                                         31   0.72 
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938...    29   2.2  

>05_05_0279 -
           23794964-23795111,23795486-23795634,23796120-23796221,
           23796309-23796384,23796578-23796588
          Length = 161

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 170 KVTWTVLYRRKFKKG-QEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 328
           K+TWT +YR++ KK    E                IVGASL  I  KR  KPEV
Sbjct: 50  KLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGASLEVIQKKRAEKPEV 103



 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 27 MKIGLCAYSGYKIYPGHG 80
          +K  LC +SG KIYPG G
Sbjct: 3  LKTELCRFSGQKIYPGKG 20


>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
            34673237-34675178,34675588-34675658,34676158-34676307,
            34676963-34677038,34677131-34677232,34677707-34677855,
            34678214-34678364
          Length = 1172

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 170  KVTWTVLYRRKFKKG-QEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 328
            K+TWT +YR++ KK    E                IVGA+L  I  KR+ KPEV
Sbjct: 1060 KLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEV 1113



 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 39   LCAYSGYKIYPGHG 80
            LC +SG KIYPG G
Sbjct: 1017 LCRFSGQKIYPGKG 1030


>07_01_0849 +
           6896930-6896996,6897453-6897474,6897615-6897690,
           6897775-6897876,6898156-6898304,6898637-6898784
          Length = 187

 Score = 35.9 bits (79), Expect = 0.019
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 170 KVTWTVLYRRKFKKG-QEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 328
           K+TWT +YR++ KK    E                IVGA+L  I  KR  KPEV
Sbjct: 76  KLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEV 129



 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 21 VKMKIGLCAYSGYKIYPGHG 80
          +K+   LC +SG KIYPG G
Sbjct: 27 LKVWTELCRFSGAKIYPGKG 46


>04_03_0395 -
           15356255-15356292,15356507-15356620,15356728-15356809,
           15356862-15357236,15357256-15357320,15357534-15357662,
           15357759-15357854,15357959-15357983
          Length = 307

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -3

Query: 182 SMLLXRGFLLIKWAASHFEFRNVKVFPSTLXHGLAMAWIYFV 57
           +M++ RG LL+     + ++R  K FP+ L HG+    IYFV
Sbjct: 238 NMVVWRGELLLIIRHYNGDYRGCKSFPAGLHHGVEGDHIYFV 279


>03_05_0593 - 25959013-25959789
          Length = 258

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 288 SEAPTIARWNFWVLLVRFFACSSSWP-FLNLRLYRTVHVTLXRIPPHQMG 142
           +E P+ +     +L  + F CSS+ P FL+ R  R  HV +   PP   G
Sbjct: 46  AEGPSSSMSPTSILETKQFCCSSAMPPFLSERSLRKAHVEMAAAPPEPAG 95


>07_01_1199 +
           11391638-11391718,11393477-11393590,11393690-11393826,
           11393905-11394064
          Length = 163

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 100 DGKTFTFLNSKCEAAHLMRRNPR 168
           D K F F  SKC     M+RNPR
Sbjct: 25  DAKIFRFCRSKCHKNFKMKRNPR 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,924,620
Number of Sequences: 37544
Number of extensions: 196743
Number of successful extensions: 379
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)