Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_D03
(514 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M94314-1|AAC28251.1| 157|Homo sapiens ribosomal protein L30 pro... 63 5e-10
CR456729-1|CAG33010.1| 157|Homo sapiens RPL24 protein. 63 5e-10
BC070193-1|AAH70193.1| 157|Homo sapiens ribosomal protein L24 p... 63 5e-10
BC000690-1|AAH00690.1| 157|Homo sapiens ribosomal protein L24 p... 63 5e-10
AB061828-1|BAB79466.1| 157|Homo sapiens ribosomal protein L24 p... 63 5e-10
AL158815-1|CAI19461.1| 128|Homo sapiens se, the PEX6 gene for p... 61 3e-09
AM083292-1|CAL07438.1| 95|Homo sapiens immunoglobulin heavy ch... 31 2.4
AM081269-1|CAL05415.1| 101|Homo sapiens immunoglobulin heavy ch... 31 3.1
AK097859-1|BAC05186.1| 474|Homo sapiens protein ( Homo sapiens ... 29 9.5
>M94314-1|AAC28251.1| 157|Homo sapiens ribosomal protein L30
protein.
Length = 157
Score = 63.3 bits (147), Expect = 5e-10
Identities = 30/53 (56%), Positives = 33/53 (62%)
Frame = +2
Query: 170 KVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 328
++ WTVLYRRK KKGQ EE I GASL+DIMAKRN KPEV
Sbjct: 48 QINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEV 100
Score = 44.8 bits (101), Expect = 2e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +1
Query: 82 RPWXKVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 237
R + + DGK F FLN+KCE+A L +RNPR N + + +KG K+
Sbjct: 19 RRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKK 70
Score = 40.3 bits (90), Expect = 0.004
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = +3
Query: 27 MKIGLCAYSGYKIYPGHGK 83
MK+ LC++SGYKIYPGHG+
Sbjct: 1 MKVELCSFSGYKIYPGHGR 19
>CR456729-1|CAG33010.1| 157|Homo sapiens RPL24 protein.
Length = 157
Score = 63.3 bits (147), Expect = 5e-10
Identities = 30/53 (56%), Positives = 33/53 (62%)
Frame = +2
Query: 170 KVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 328
++ WTVLYRRK KKGQ EE I GASL+DIMAKRN KPEV
Sbjct: 48 QINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEV 100
Score = 44.8 bits (101), Expect = 2e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +1
Query: 82 RPWXKVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 237
R + + DGK F FLN+KCE+A L +RNPR N + + +KG K+
Sbjct: 19 RRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKK 70
Score = 40.3 bits (90), Expect = 0.004
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = +3
Query: 27 MKIGLCAYSGYKIYPGHGK 83
MK+ LC++SGYKIYPGHG+
Sbjct: 1 MKVELCSFSGYKIYPGHGR 19
>BC070193-1|AAH70193.1| 157|Homo sapiens ribosomal protein L24
protein.
Length = 157
Score = 63.3 bits (147), Expect = 5e-10
Identities = 30/53 (56%), Positives = 33/53 (62%)
Frame = +2
Query: 170 KVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 328
++ WTVLYRRK KKGQ EE I GASL+DIMAKRN KPEV
Sbjct: 48 QINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEV 100
Score = 44.8 bits (101), Expect = 2e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +1
Query: 82 RPWXKVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 237
R + + DGK F FLN+KCE+A L +RNPR N + + +KG K+
Sbjct: 19 RRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKK 70
Score = 40.3 bits (90), Expect = 0.004
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = +3
Query: 27 MKIGLCAYSGYKIYPGHGK 83
MK+ LC++SGYKIYPGHG+
Sbjct: 1 MKVELCSFSGYKIYPGHGR 19
>BC000690-1|AAH00690.1| 157|Homo sapiens ribosomal protein L24
protein.
Length = 157
Score = 63.3 bits (147), Expect = 5e-10
Identities = 30/53 (56%), Positives = 33/53 (62%)
Frame = +2
Query: 170 KVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 328
++ WTVLYRRK KKGQ EE I GASL+DIMAKRN KPEV
Sbjct: 48 QINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEV 100
Score = 44.8 bits (101), Expect = 2e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +1
Query: 82 RPWXKVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 237
R + + DGK F FLN+KCE+A L +RNPR N + + +KG K+
Sbjct: 19 RRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKK 70
Score = 40.3 bits (90), Expect = 0.004
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = +3
Query: 27 MKIGLCAYSGYKIYPGHGK 83
MK+ LC++SGYKIYPGHG+
Sbjct: 1 MKVELCSFSGYKIYPGHGR 19
>AB061828-1|BAB79466.1| 157|Homo sapiens ribosomal protein L24
protein.
Length = 157
Score = 63.3 bits (147), Expect = 5e-10
Identities = 30/53 (56%), Positives = 33/53 (62%)
Frame = +2
Query: 170 KVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 328
++ WTVLYRRK KKGQ EE I GASL+DIMAKRN KPEV
Sbjct: 48 QINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEV 100
Score = 44.8 bits (101), Expect = 2e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +1
Query: 82 RPWXKVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 237
R + + DGK F FLN+KCE+A L +RNPR N + + +KG K+
Sbjct: 19 RRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKK 70
Score = 40.3 bits (90), Expect = 0.004
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = +3
Query: 27 MKIGLCAYSGYKIYPGHGK 83
MK+ LC++SGYKIYPGHG+
Sbjct: 1 MKVELCSFSGYKIYPGHGR 19
>AL158815-1|CAI19461.1| 128|Homo sapiens se, the PEX6 gene for
peroxisomal biogenesis factorA, member 8) protein.
Length = 128
Score = 60.9 bits (141), Expect = 3e-09
Identities = 29/53 (54%), Positives = 32/53 (60%)
Frame = +2
Query: 170 KVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 328
++ WTVLYRRK KKGQ EE I GASL+DI AKRN KPEV
Sbjct: 48 QINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADITAKRNQKPEV 100
Score = 44.0 bits (99), Expect = 3e-04
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +1
Query: 82 RPWXKVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 237
R + + DGK F FLN+KCE A L +RNPR N + + +KG K+
Sbjct: 19 RRYARTDGKVFQFLNAKCELAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKK 70
Score = 40.3 bits (90), Expect = 0.004
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = +3
Query: 27 MKIGLCAYSGYKIYPGHGK 83
MK+ LC++SGYKIYPGHG+
Sbjct: 1 MKVELCSFSGYKIYPGHGR 19
>AM083292-1|CAL07438.1| 95|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.4
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 164 GFLLIKWAASHFEFRNVKVFPSTLXHGLAMAWIYFVSTIGAKSDL 30
G L + AAS F FRN V L G + W+ VS G +S L
Sbjct: 14 GSLRLSCAASGFTFRNYDVTWVRLAPGKGLEWVSGVSGSGGRSSL 58
>AM081269-1|CAL05415.1| 101|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 101
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -3
Query: 191 TGQSMLLXRGFLLIKWAASHFEFRNVKVFPSTLXHGLAMAWIYFVSTIGA 42
+G ++ G L + AASHF FRN + G + W+ +S GA
Sbjct: 10 SGGDLVQPGGSLRLSCAASHFTFRNYAMAWVRQAPGKGLEWVSTISASGA 59
>AK097859-1|BAC05186.1| 474|Homo sapiens protein ( Homo sapiens
cDNA FLJ40540 fis, clone THYMU1000554, highly similar to
Homo sapiens mRNA for immunoglobulin lambda heavy chain.
).
Length = 474
Score = 29.1 bits (62), Expect = 9.5
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -3
Query: 191 TGQSMLLXRGFLLIKWAASHFEFRNVKVFPSTLXHGLAMAWIYFVSTIGAKSDLHFDLTK 12
+G ++ G L + A S F F N ++ G + W+ ++ST GA S L+ D K
Sbjct: 26 SGGGLVQPGGSLTLSCAVSGFTFSNYELNWVRQAPGKGLEWLSYISTSGA-SQLYADPVK 84
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,760,415
Number of Sequences: 237096
Number of extensions: 1147598
Number of successful extensions: 8149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8149
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4820001670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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