Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_D02
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    41   1e-04
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    29   0.50 
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    29   0.50 
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    28   0.88 
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    28   0.88 
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   3.5  
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    25   4.7  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    25   6.2  
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    25   6.2  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    25   6.2  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    25   8.2  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   8.2  

>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
 Frame = +2

Query: 308 EAPKEMTEDI--AEPATP--YHYENFFHDQINAKKRDYSYRVFRKVSRLAADGVYPKA-L 472
           + PK    D+    PAT   + Y+ F+ ++++ K RD SYR F  ++RLA +  YP A L
Sbjct: 112 QMPKHYASDLNGVGPATTPRFDYDTFYREELDKKHRDKSYRYFNNINRLAKE--YPLAHL 169

Query: 473 XGPENR 490
             P  R
Sbjct: 170 ADPNTR 175


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 230 IISRGFRSLGNDETKCPFIQQNSIISEAPKEMTEDI 337
           I+SRG  S+ + E+K   I  N + SEAP  +  ++
Sbjct: 736 IVSRGLWSIDSKESKNMHISSNVVASEAPDALAANL 771


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 260 NDETKCPFIQQNSIISEAPKEMTEDIAEPATPYHYENFFHDQINAKKRDYS 412
           +DE  C F+   + +    +   +D+ E  + YHYE F   Q+++ K   S
Sbjct: 260 DDENHCEFVFLRNFLM---RTHLQDLIETTSYYHYEKFRFKQLSSLKEQSS 307


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 27.9 bits (59), Expect = 0.88
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 346 RFRDVLGHFLRSFRNDRVLLNEGAFG 269
           +F  + G+ ++   NDRVL  EG FG
Sbjct: 464 KFYKIWGNEMQEIHNDRVLYREGIFG 489


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 27.9 bits (59), Expect = 0.88
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -2

Query: 271 GFVISQRTKSTRYNRAIISVLLHSGSHHNFSRTLGSTI 158
           GF++   T STRYN A+I V L        SR LG T+
Sbjct: 335 GFLVG--TSSTRYNEALIDVSLRQS---RMSRRLGFTL 367


>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = +1

Query: 79  LQLQQVS*VFCVIDYIKIVKCLVRFLGSLNQAFVKNYGATLNEAVRKLLPDYISWISFFG 258
           LQ  ++   +C    + +    V  L S++  F+   G    E++ K   DY   I+ F 
Sbjct: 51  LQAIKIKIEWCKDTSVLLSSICVMLLDSIHD-FLVQQGKITKESISKR--DYSHEITIFN 107

Query: 259 K*RNQMPLHSAKLYHF 306
               Q  + + KLYHF
Sbjct: 108 FKYAQQEMQNEKLYHF 123


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 245 FRSLGNDETKCPFIQQNSIISEAPKEM-TEDIAEPATPYHYENFFHDQINAKK 400
           + SLG D           +I     ++ T  I+   +PY Y N+F D ++  K
Sbjct: 143 YHSLGFDLETAENTGNKRVIIHTENDLQTVQISNKYSPYFYSNYFWDLLDDSK 195


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 243 DFVLWEMTKPNAPSFSKTLS 302
           DF LW+ +KP  PS+    S
Sbjct: 321 DFALWKASKPGEPSWDSPWS 340


>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 317 KEMTEDIAEPATPYHYENFFHDQINAKKRDY 409
           ++M E I +   P   +NFFH+  +  K +Y
Sbjct: 357 RDMRESIIKDEFPSFVKNFFHEWNHGDKSNY 387


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 386 INAKKRDYSYRVFRKVSRLAADGVYPKALXGPENR 490
           +   KR+++  +FR++ +L  D   P+ L   E R
Sbjct: 475 VKGNKREFAPVMFRRLKKLGIDKTNPEELTEEEQR 509


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
 Frame = -2

Query: 343 FRDVLGHFLRSFRNDRVLL-NEGAFGFVISQRTKSTRYNRAIISVLLHSGSHHNFSRTLG 167
           F  + G  L S  N  + L N     + +S       YN  +I+ L       +   T  
Sbjct: 322 FNSISGCDLYSLSNFLLYLENSCVITYDVSLDCSFNEYNDPLITYLNREDVRSSLHATKA 381

Query: 166 STIPKTGQGILRFLCN 119
           ST   +G+G+    CN
Sbjct: 382 STALTSGEGVFADGCN 397


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +1

Query: 49  PTFSY-P*INYLQLQQV--S*VFCVIDYIKIVKCLVRFLGSLNQAFVKNYGATLNEAVRK 219
           PT +Y P ++Y +L+    + +    DY+K+V           +  VK Y  TL+  ++ 
Sbjct: 156 PTDAYTPMVSYRKLKSKLKTTLLDFYDYLKLVSQYQHLNQQAFRKIVKKYDKTLHTDLQG 215

Query: 220 LLPDYISWISF 252
              DY+S  +F
Sbjct: 216 FWVDYMSRYTF 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,495
Number of Sequences: 5004
Number of extensions: 42591
Number of successful extensions: 129
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)