Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_D02
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937...    29   2.0  
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041...    28   4.7  
06_03_0157 + 17337641-17337896,17337975-17338082,17338643-173389...    27   8.2  
04_04_0834 - 28530662-28530775,28531008-28531100                       27   8.2  
04_01_0137 - 1549562-1550213,1553363-1553896,1554524-1554606           27   8.2  
01_06_0746 - 31636024-31641396                                         27   8.2  

>02_04_0516 +
           23593088-23593116,23593209-23593336,23593527-23593714,
           23593861-23593919,23594997-23595345,23596081-23596333,
           23596404-23597476
          Length = 692

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +2

Query: 236 SRGFRSLGNDETKCPFIQQNSIISEAPKEMTEDIAEPATPYH 361
           S+  R  G D  K      N I  E+ K + E I EP TPYH
Sbjct: 6   SKKSRDRGRDRVKWNEENLNDI--ESTKPVREKITEPKTPYH 45


>02_04_0621 -
           24502383-24502476,24502532-24504015,24504125-24504177,
           24504871-24504984,24505068-24505202,24505960-24506055,
           24506692-24506827
          Length = 703

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 344 PATPYHYENFFHDQINAK 397
           PATP   E  +H+Q+NAK
Sbjct: 101 PATPCKNEEIYHEQVNAK 118


>06_03_0157 +
           17337641-17337896,17337975-17338082,17338643-17338908,
           17339933-17340021,17340095-17340198,17340403-17340508,
           17340600-17340675,17340772-17340883,17341719-17342250,
           17343097-17343131,17343924-17343984,17344054-17344132,
           17344266-17344349
          Length = 635

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 354 GVAGSAMSSVISLGASEMIEFC*MKGHLVSS 262
           G+AGS  +  + LGAS  I    M  HL SS
Sbjct: 89  GIAGSRRALAVGLGASAAIALVGMMWHLPSS 119


>04_04_0834 - 28530662-28530775,28531008-28531100
          Length = 68

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2

Query: 205 HSGSHHNFSRTLGSTIPKTGQG 140
           H G   N SRTL ST P+T QG
Sbjct: 45  HPGMGVNNSRTLQSTAPRTPQG 66


>04_01_0137 - 1549562-1550213,1553363-1553896,1554524-1554606
          Length = 422

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 352 SRRFR-DVLGHFLRSFRNDRVLLNEGAFGFVISQRTKSTRYNRAIISVLLHSGSHH 188
           +RRF  D L     +F +DR L  EGAFG V S   K      A+  ++  S   H
Sbjct: 73  ARRFEYDDLAIATGNFSDDRKL-GEGAFGVVYSGFLKRLEREVAVKKIVRESSQEH 127


>01_06_0746 - 31636024-31641396
          Length = 1790

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 214 RKLLPDYISWISFFGK*RN-QMPLHSAKLYHFGSS*GND 327
           RKLL +Y SW ++ G+ R+ ++P         G++ GND
Sbjct: 132 RKLLKNYTSWCAYLGQKRHFRVPSGGGGGRRTGAATGND 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,791,447
Number of Sequences: 37544
Number of extensions: 247824
Number of successful extensions: 563
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)