Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_D02
         (491 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   3.1  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    22   4.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.4  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 199 LNEAVRKLLPDYISWISFFG 258
           LNE + KL+   I W S FG
Sbjct: 271 LNEIIMKLVGIIIMWYSPFG 290


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 302 ISEAPKEMTEDIAEPATPYHYEN 370
           +S  PK + E     A PY Y+N
Sbjct: 9   VSTMPKSLKEPCDGCAAPYGYKN 31


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +2

Query: 281 FIQQNSIISEAPKEMTEDIAEPATPYHYENFFHDQINAKKRDYSY 415
           F  +N++I  A +  +  + +PA    Y+N     +  KK    Y
Sbjct: 397 FQNKNNLIPSALQSYSTSMRDPAFYMLYQNILSYFLRYKKLQPQY 441


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 235 YNRAIISVLLHSGSHHNF 182
           Y+R  +S  L    HHNF
Sbjct: 114 YDRDSLSCWLQMTKHHNF 131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,059
Number of Sequences: 438
Number of extensions: 2917
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)