Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_D01
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch...    74   9e-15
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    29   0.35 
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    25   4.3  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   4.3  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   5.7  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    24   7.6  

>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
           Dap1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 166

 Score = 73.7 bits (173), Expect = 9e-15
 Identities = 33/57 (57%), Positives = 45/57 (78%)
 Frame = +2

Query: 209 KDLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLA 379
           +D T AELK+Y+G++ +  V LA+ G +++VT G +FYGP GPYSAFAG DA+RGLA
Sbjct: 41  RDYTPAELKEYNGSK-NSLVFLAIKGTVYNVTMGSKFYGPQGPYSAFAGHDASRGLA 96


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 28.7 bits (61), Expect = 0.35
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +2

Query: 251 QPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATG 385
           Q   R L+ +NG++ D+T  +   G G   SAF GKDAT     G
Sbjct: 369 QSKTRPLVLINGVVHDMTGFEHPGGQGLLRSAF-GKDATAAFNGG 412


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 44  MADETNSPTVWDELTSP 94
           M  E   PT+W++LT P
Sbjct: 52  MLSEVQKPTLWEKLTKP 68


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 282  MELYLTLLEARDFMDREAHTRRLLVK 359
            +E+  TLL   ++M+RE HT  + +K
Sbjct: 1200 VEILQTLLNLAEYMEREDHTLPIPIK 1225


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 346 RRVWASRSIKSLASSNVKYNSIHSQKNSS 260
           R+ WA+ + K+LAS  +  N   ++KN S
Sbjct: 769 RKTWANLNSKTLASFELLNNLTEARKNFS 797


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 81  SSHTVGLLVSSAILYTCCVRERVACTS 1
           S H+V   ++ +I Y  C R R  C S
Sbjct: 446 SKHSVFYAINQSIFYIFCFRWRELCVS 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,487,691
Number of Sequences: 5004
Number of extensions: 25063
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)