Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_D01
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0826 + 11569961-11570301,11572220-11572454 75 2e-14
10_08_0543 - 18649894-18650233,18651446-18651981 74 4e-14
10_08_0544 - 18655186-18655567,18656835-18657151 74 5e-14
02_05_0089 - 25715637-25716333,25716481-25717238 74 5e-14
02_05_1047 + 33745656-33745964 69 1e-12
03_02_0079 + 5485090-5485238,5486066-5486137,5486764-5486840,548... 38 0.004
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665... 29 1.0
11_02_0038 - 7631462-7634428,7635975-7636250 28 2.4
12_02_1109 + 26151421-26153601 27 4.1
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313... 27 4.1
08_02_1257 - 25646029-25646054,25646139-25646236,25646609-256467... 27 7.2
03_04_0089 - 17217235-17217461,17218298-17218418 27 7.2
01_06_0966 - 33453963-33456692 27 7.2
02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254,463... 26 9.5
>03_02_0826 + 11569961-11570301,11572220-11572454
Length = 191
Score = 74.9 bits (176), Expect = 2e-14
Identities = 31/56 (55%), Positives = 42/56 (75%)
Frame = +2
Query: 212 DLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLA 379
++T+ +L YDG P +L+A+ G ++DVTRG+ FYGP GPYS FAG+DATR LA
Sbjct: 81 EITLEQLAAYDGKDPAKPILIAIRGQVYDVTRGRLFYGPQGPYSLFAGRDATRALA 136
>10_08_0543 - 18649894-18650233,18651446-18651981
Length = 291
Score = 74.1 bits (174), Expect = 4e-14
Identities = 30/56 (53%), Positives = 44/56 (78%)
Frame = +2
Query: 212 DLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLA 379
++T EL +YDG+ P+ +L+A+ G I+DV++ + FYGPGGPY+ FAGKDA+R LA
Sbjct: 146 EITAEELLQYDGSDPEKPLLMAIKGQIYDVSQSRLFYGPGGPYALFAGKDASRALA 201
>10_08_0544 - 18655186-18655567,18656835-18657151
Length = 232
Score = 73.7 bits (173), Expect = 5e-14
Identities = 30/56 (53%), Positives = 44/56 (78%)
Frame = +2
Query: 212 DLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLA 379
+++ EL++YDG+ P +L+A+ G I+DVT+ + FYGPGGPY+ FAGKDA+R LA
Sbjct: 73 EVSEEELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALA 128
>02_05_0089 - 25715637-25716333,25716481-25717238
Length = 484
Score = 73.7 bits (173), Expect = 5e-14
Identities = 30/56 (53%), Positives = 44/56 (78%)
Frame = +2
Query: 212 DLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLA 379
++T EL+ YDG+ P+ +L+A+ G I+DVT+ + FYGPGGPY+ FAG+DA+R LA
Sbjct: 220 EVTEEELRVYDGSDPNKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGRDASRALA 275
>02_05_1047 + 33745656-33745964
Length = 102
Score = 68.9 bits (161), Expect = 1e-12
Identities = 27/55 (49%), Positives = 41/55 (74%)
Frame = +2
Query: 212 DLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGL 376
+LT A+L+ YDG+ P + ++V G ++DVT G+ FYGPGG Y+ FAG++A+R L
Sbjct: 4 ELTAAQLRAYDGSDPSKPIYVSVRGKVYDVTSGRGFYGPGGAYAVFAGREASRAL 58
>03_02_0079 +
5485090-5485238,5486066-5486137,5486764-5486840,
5486946-5486989,5487583-5487639,5487640-5487686,
5488010-5488184,5489501-5489662,5489845-5489883
Length = 273
Score = 37.5 bits (83), Expect = 0.004
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2
Query: 290 IFDVTRGKRFYGPGGPYSAFAG 355
+FDVT+GK YGPGG Y FAG
Sbjct: 52 VFDVTKGKSNYGPGGGYHHFAG 73
>01_06_0903 +
32862551-32864752,32865341-32865535,32866219-32866523,
32866664-32866849,32867137-32867314,32867548-32867574
Length = 1030
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 361 VFTSKRRVWASRSIKSLASSNVKYNSIHSQKNSSVRLS 248
+F S RR W S+++ +LAS Y+S+ VR++
Sbjct: 218 LFLSSRRAWISQALTTLASDLTSYSSVLCDVAKIVRVT 255
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 20 SRTQHVYKMADETNSPTVWDELTSPLNL 103
+ T+ Y M D TN V+DEL P NL
Sbjct: 804 THTKESYTMEDITNIENVFDELKPPCNL 831
>12_02_1109 + 26151421-26153601
Length = 726
Score = 27.5 bits (58), Expect = 4.1
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Frame = +2
Query: 59 NSPTVWDELTSPLNLVLIG-----VIVYLIYKIIKSNFESEANVXXXXXXXXKLRKDLTV 223
++P V+DE+ S L+ + V+ +I + ++ E A + KLR + V
Sbjct: 125 HAPEVFDEMLSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRV 184
Query: 224 AELKKYDGTQPDGRVL-LAVNGII 292
L + DG PD + +AVN ++
Sbjct: 185 LHLMQKDGCAPDISICNMAVNVLV 208
>08_01_0356 +
3131214-3132443,3132584-3132778,3132892-3132972,
3133324-3133383,3133466-3133560,3133660-3133816,
3133896-3134021,3134398-3134478,3134557-3134647,
3134735-3134868,3135068-3135136,3135219-3135308,
3135405-3135508,3135594-3135762,3136066-3136134
Length = 916
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 379 GQASCGVFTSKRRVWASRSIKSLASSNVKYNSIHSQKNSSVR 254
G AS + +SK +V S SIK+ +SS + N + +NS R
Sbjct: 229 GNASASISSSKDKV-LSASIKASSSSKMSNNDASTSRNSIKR 269
>08_02_1257 -
25646029-25646054,25646139-25646236,25646609-25646700,
25646786-25646893,25647212-25647346,25647648-25647752,
25647951-25648088,25648865-25648963,25649079-25649195,
25649446-25649610,25649955-25650014,25650395-25650559,
25650636-25650746,25651220-25651333,25651466-25651531,
25651857-25651994,25652303-25652386,25652468-25652510,
25652621-25652676,25652772-25652880,25652944-25653026,
25653127-25653210,25653383-25653454,25653557-25653634,
25653717-25653800,25653892-25653962,25654095-25654164,
25654314-25654403,25654500-25654661,25654702-25654817,
25654946-25654988,25655069-25655185,25655897-25656046
Length = 1082
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 117 TPISTRLRGLVNSSHTVGLLVSSAILYTCCVR 22
TP+ RL G+ VGL V+ A+L +R
Sbjct: 376 TPLQVRLNGVATFIGMVGLTVAGAVLVVLWIR 407
>03_04_0089 - 17217235-17217461,17218298-17218418
Length = 115
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 318 FMDREAHTRRLLVKTPQEAWPQGQVA 395
F R A RR L+ TP+ WP +A
Sbjct: 62 FCRRSAAVRRDLLHTPRHVWPSQMIA 87
>01_06_0966 - 33453963-33456692
Length = 909
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 17 RSRTQHVYKMADETNSPTVWDELTSPLNLVLIGVIV 124
R R +Y++ + N + D+L PLN +IG+ V
Sbjct: 234 RERAGMLYRVLTKMNFVLLLDDLWEPLNFQMIGIPV 269
>02_01_0618 -
4629776-4630037,4630188-4630330,4631200-4631254,
4631539-4631603,4631714-4631857,4632141-4632194,
4632363-4632410,4632466-4632541,4632624-4632722,
4633000-4633097,4633615-4633719,4633816-4633924,
4634137-4634252,4634332-4634496
Length = 512
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 26 TQHVYKMADETNSPTVWDELTSPLNLVLIGVIVYLIYK-IIKSNFESEAN 172
TQH Y + ET +W S +++V+I +++ Y ++ S E + N
Sbjct: 244 TQHCYSLELETQKMGIW---LSTISMVIIQLMIVEEYNDLVTSQLEKQRN 290
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,583,765
Number of Sequences: 37544
Number of extensions: 154563
Number of successful extensions: 419
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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