Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_D01
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian...    73   1e-13
U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian...    73   1e-13
AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical ...    54   5e-08
AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical ...    27   3.7  
Z81044-9|CAB02812.2|  677|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z73896-4|CAA98057.2|  503|Caenorhabditis elegans Hypothetical pr...    27   6.5  

>U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform b
           protein.
          Length = 183

 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 33/57 (57%), Positives = 40/57 (70%)
 Frame = +2

Query: 212 DLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLAT 382
           D+TV EL+KYDG + +  +L  +NG I+DVTRGK FYGPG  Y   AG DATR L T
Sbjct: 49  DMTVEELRKYDGVKNE-HILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGT 104


>U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform a
           protein.
          Length = 198

 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 33/57 (57%), Positives = 40/57 (70%)
 Frame = +2

Query: 212 DLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLAT 382
           D+TV EL+KYDG + +  +L  +NG I+DVTRGK FYGPG  Y   AG DATR L T
Sbjct: 64  DMTVEELRKYDGVKNE-HILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGT 119


>AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical
           protein H38K22.3 protein.
          Length = 326

 Score = 53.6 bits (123), Expect = 5e-08
 Identities = 24/56 (42%), Positives = 34/56 (60%)
 Frame = +2

Query: 218 TVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATG 385
           T  +L  +DGT+    + LA+ G +++V   K +YGPG  Y  FAG+DATR   TG
Sbjct: 102 TPEQLHFFDGTRDSKPIYLAILGRVYNVDGKKEYYGPGKSYHHFAGRDATRAFTTG 157


>AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical
           protein Y47H9C.9 protein.
          Length = 829

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -1

Query: 358 FTSKRRVWASRSIKSLASSNVKYNSIHSQKNSSVRLSS 245
           F + ++ WA  S + + S +  YN +++Q  +S +LS+
Sbjct: 768 FVNAKKTWALTSEQGIESLHSWYNKLNAQIRTSAKLST 805


>Z81044-9|CAB02812.2|  677|Caenorhabditis elegans Hypothetical
           protein C30H6.6 protein.
          Length = 677

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -2

Query: 129 RYTITPISTRLRGLVNSSHTVGLLVSSAILYTCCVRERV 13
           R T+  +  R        H +G +    +L+TC +RE +
Sbjct: 469 RVTVDGVDLRDLNATTWRHAIGTVGQEPVLFTCSIRENI 507


>Z73896-4|CAA98057.2|  503|Caenorhabditis elegans Hypothetical
           protein F09E8.6 protein.
          Length = 503

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 300 LLEARDFMDREAHTRRLLVKTPQEAWPQGQV 392
           LL+  +   +  H+   LV  P + WP+GQV
Sbjct: 100 LLDEDEIFRKPFHSALNLVTYPDKLWPEGQV 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,077,980
Number of Sequences: 27780
Number of extensions: 133212
Number of successful extensions: 317
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)