Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_C24
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 143 2e-35
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 107 2e-24
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 74 2e-14
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 58 1e-09
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 56 6e-09
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 55 8e-09
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 52 9e-08
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 36 0.005
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 31 0.14
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 29 0.58
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 27 1.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.3
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 26 5.4
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo... 26 5.4
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 7.1
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 7.1
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 7.1
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 7.1
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 7.1
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 7.1
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 25 7.1
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 7.1
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 7.1
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.1
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 7.1
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 7.1
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 7.1
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 25 9.4
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 143 bits (346), Expect = 2e-35
Identities = 73/165 (44%), Positives = 104/165 (63%), Gaps = 1/165 (0%)
Frame = +3
Query: 132 AVATIQKKTATTNPGPGGVRKKSGPKFELTEEQKRDIKEAFDLFDTENTGKIDTKELKVA 311
A A ++++ ++P P + + + E+TEEQ++DI EAF LFD++ ID EL+ A
Sbjct: 3 ANARAKRRSRASSPTPARLGGYAPLRVEITEEQRQDINEAFKLFDSDKDNAIDYHELRAA 62
Query: 312 IRALGFEPXXXXXXXXXXXXXX-GDGKVSFDDFMELMSVKMAEKDTREEIMKAFKLFDDD 488
+RALGF G G + +DF+ +M+ K+ E+D EEI +AF+LFDDD
Sbjct: 63 MRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFVRVMTEKIVERDPLEEIKRAFELFDDD 122
Query: 489 ETGKISFKNLKRVAKELGENLTDEELHEMIDEADRDGDGENKSEE 623
ETGKIS +NL+RVAKEL EN+ D+EL MI+E D D DGE +E
Sbjct: 123 ETGKISLRNLRRVAKELNENIDDQELEAMIEEFDLDQDGEINEQE 167
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 107 bits (256), Expect = 2e-24
Identities = 56/137 (40%), Positives = 78/137 (56%), Gaps = 1/137 (0%)
Frame = +3
Query: 216 LTEEQKRDIKEAFDLFDTENTGKIDTKELKVAIRALGFEPXXXXXXXXXXXXXX-GDGKV 392
LT+EQ + +EAF LFD + G I + EL V +R+LG P G+G +
Sbjct: 6 LTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTI 65
Query: 393 SFDDFMELMSVKMAEKDTREEIMKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELHE 572
F +F+ +M+ KM + D EE+ +AFK+FD D G I+ + L V LGE L+ EE+ +
Sbjct: 66 DFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVAD 125
Query: 573 MIDEADRDGDGENKSEE 623
MI EAD DGDG EE
Sbjct: 126 MIREADTDGDGVINYEE 142
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 73.7 bits (173), Expect = 2e-14
Identities = 43/129 (33%), Positives = 64/129 (49%)
Frame = +3
Query: 219 TEEQKRDIKEAFDLFDTENTGKIDTKELKVAIRALGFEPXXXXXXXXXXXXXXGDGKVSF 398
++EQ ++KEAF L+D + G I T + +R+LG GD +
Sbjct: 4 SKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGIN--VTDAELAKLSNELGDA-IDE 60
Query: 399 DDFMELMSVKMAEKDTREEIMKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELHEMI 578
FM +S K+ E ++ EE +KAF++FD D +G I K LGE L+D E+ M+
Sbjct: 61 KKFMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMV 120
Query: 579 DEADRDGDG 605
EAD G
Sbjct: 121 QEADPTNSG 129
Score = 39.5 bits (88), Expect = 4e-04
Identities = 19/51 (37%), Positives = 32/51 (62%)
Frame = +3
Query: 432 AEKDTREEIMKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELHEMIDE 584
A K+ +E+ +AF L+D D+ G I ++ V + LG N+TD EL ++ +E
Sbjct: 3 ASKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNE 53
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 57.6 bits (133), Expect = 1e-09
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 5/140 (3%)
Frame = +3
Query: 219 TEEQKRDIKEAFDLFDTENTGKIDTKELKVAIRALGFEPXXXXXXXXXXXXXXGDGKVSF 398
+ E+ I++ F D +G ID E ++I ++ P GD V F
Sbjct: 19 SNEEIERIRKRFIKIDANQSGSIDRNEF-LSIPSVASNPLASRLFSVVDEDGGGD--VDF 75
Query: 399 DDFMELMSVKMAEKDTREEIMKAFKLFDDDETGKISFKNLKRVAKEL-GENLTDEELHEM 575
+F+ +SV + E++ AFK++D D G IS L V K + G NL +++L ++
Sbjct: 76 QEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQI 135
Query: 576 ID----EADRDGDGENKSEE 623
+D E D+D DG+ EE
Sbjct: 136 VDKTIMEVDKDRDGKISFEE 155
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 55.6 bits (128), Expect = 6e-09
Identities = 29/130 (22%), Positives = 60/130 (46%)
Frame = +3
Query: 189 RKKSGPKFELTEEQKRDIKEAFDLFDTENTGKIDTKELKVAIRALGFEPXXXXXXXXXXX 368
R SG +LT Q +++KEAF L D + G I +++K + +L +
Sbjct: 33 RASSGAFAQLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSINHMFES 92
Query: 369 XXXGDGKVSFDDFMELMSVKMAEKDTREEIMKAFKLFDDDETGKISFKNLKRVAKELGEN 548
+ ++ F+ M + R ++++AF FDD ++GKI ++ +G+
Sbjct: 93 I---NPPINLAAFLTAMGSMLCRISPRNDLLEAFSTFDDTQSGKIPISTMRDALSSMGDR 149
Query: 549 LTDEELHEMI 578
+ +E+ ++
Sbjct: 150 MDPQEVESIL 159
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 55.2 bits (127), Expect = 8e-09
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Frame = +3
Query: 243 KEAFDLFDTENTGKIDTKELKVAIRALGFEPXXXXXXXXXXXXXXGDGKVSFDDFMELMS 422
K+AF LFD TG+I + +RA G P +V + F+++++
Sbjct: 9 KQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLP---AEVDMEQFLQVLN 65
Query: 423 VKMA--EKDTREEIMKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELHEMI 578
EE +K F++FD D TG I L+ V LGE L++EE+ E++
Sbjct: 66 RPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELL 119
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 51.6 bits (118), Expect = 9e-08
Identities = 27/61 (44%), Positives = 36/61 (59%)
Frame = +3
Query: 417 MSVKMAEKDTREEIMKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELHEMIDEADRD 596
MSV + EE +AF LFD G I F++L+R +LGENLT E+L M+D A +
Sbjct: 1 MSVSTKRLEMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLDLAGTN 60
Query: 597 G 599
G
Sbjct: 61 G 61
Score = 35.9 bits (79), Expect = 0.005
Identities = 22/64 (34%), Positives = 32/64 (50%)
Frame = +3
Query: 225 EQKRDIKEAFDLFDTENTGKIDTKELKVAIRALGFEPXXXXXXXXXXXXXXGDGKVSFDD 404
E + +EAFDLFD + G ID ++L+ + LG E +GKVS ++
Sbjct: 9 EMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLG-ENLTKEQLQLMLDLAGTNGKVSREE 67
Query: 405 FMEL 416
F EL
Sbjct: 68 FAEL 71
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 35.9 bits (79), Expect = 0.005
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Frame = +3
Query: 381 DGKVSFDDFMELMSVKMAEKDTREEIMKAFKLFDDDETGKISFKNLKRVA----KELG-- 542
+G + F +F+ +SV + + ++++ AF+L+D D G IS+ + R+ K +G
Sbjct: 77 NGYIDFKEFICALSVT-SRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSM 135
Query: 543 ------ENLTDEELHEMIDEADRDGDGENKSEESCVS*KR 644
E+ ++ ++++ + D++ DG+ EE C KR
Sbjct: 136 VKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKR 175
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 31.1 bits (67), Expect = 0.14
Identities = 15/38 (39%), Positives = 26/38 (68%)
Frame = +3
Query: 510 KNLKRVAKELGENLTDEELHEMIDEADRDGDGENKSEE 623
KN K++A+EL ++ D E E ++AD++ E++SEE
Sbjct: 27 KNDKKIAEELPQDEDDYEQEEENEDADQNTSVESESEE 64
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 507 FKNLKRVAKELGENLTDEELHEMIDEADRDGDGENKSEE 623
F + V + E +EE EM +E D +G+G+ + EE
Sbjct: 164 FDDAPPVQPDADEEEEEEEADEMEEEFDEEGEGDEEEEE 202
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 487 SSSNSLNAFMISSLVSFSAIFTDM---SSIKSSNDTF 386
+S NSLN+++ SSL+S +IF +SI SS +F
Sbjct: 17 ASKNSLNSYLASSLMSHDSIFDGPGLGTSIPSSVSSF 53
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 2.3
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Frame = -3
Query: 499 LPVSSSSN-SLNAFMISSLVSFSAI---FTDMSSIKSSNDTFPS 380
+P SSSS+ S + ISS +S S+I F+ +SSI SS+ + PS
Sbjct: 545 IPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPS 588
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 5.4
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +3
Query: 405 FMELMSVKMAEKDTREEIMKAFKLFD---DDETGKISFKNLKRVAKELGENLTDEE-LHE 572
+ +M KMAEK+ +E+ + F L +D G+ + + AK +++ EE
Sbjct: 308 YRAIMRQKMAEKEKQEKEQRLFMLAQKAREDRMGRNAASSGPSHAKPRSTSVSSEERSRS 367
Query: 573 MIDEADRDGDGENKSEES 626
+ EN+ E+S
Sbjct: 368 RAGSFSHHSESENEDEDS 385
>SPAC18G6.06 |||U3 snoRNP-associated protein
Utp11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 498 KISFKNLKRVAKELGENLTDEELHEMIDEADRDGDGENKSEESCV 632
K K LKR+ ++ E DE HEM + ++G + E+S +
Sbjct: 43 KTKQKKLKRLREKALERNPDEFYHEMTHKKTKNGVPLEQREDSTI 87
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 235 ETSKKHLIYLIQKILEKSTPK 297
+TS +HLI L KIL K P+
Sbjct: 25 QTSDEHLINLFAKILSKHVPE 45
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 235 ETSKKHLIYLIQKILEKSTPK 297
+TS +HLI L KIL K P+
Sbjct: 25 QTSDEHLINLFAKILSKHVPE 45
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 235 ETSKKHLIYLIQKILEKSTPK 297
+TS +HLI L KIL K P+
Sbjct: 25 QTSDEHLINLFAKILSKHVPE 45
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 235 ETSKKHLIYLIQKILEKSTPK 297
+TS +HLI L KIL K P+
Sbjct: 25 QTSDEHLINLFAKILSKHVPE 45
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 235 ETSKKHLIYLIQKILEKSTPK 297
+TS +HLI L KIL K P+
Sbjct: 25 QTSDEHLINLFAKILSKHVPE 45
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 235 ETSKKHLIYLIQKILEKSTPK 297
+TS +HLI L KIL K P+
Sbjct: 25 QTSDEHLINLFAKILSKHVPE 45
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = +3
Query: 387 KVSFDDFMELMSVKMAEKDTREEIMKAFKLFDDDETGKISFKNLKRVAKELGENLTDEEL 566
K+SFD EL +++ EE ++ L + DE+ + + + EL
Sbjct: 151 KISFDSVAELAKESDEKQNAYEEKIEERILANPDESDDVMLAARDAIFSKGQSKRIWNEL 210
Query: 567 HEMIDEAD 590
+++ID +D
Sbjct: 211 YKVIDSSD 218
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 235 ETSKKHLIYLIQKILEKSTPK 297
+TS +HLI L KIL K P+
Sbjct: 25 QTSDEHLINLFAKILSKHVPE 45
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 235 ETSKKHLIYLIQKILEKSTPK 297
+TS +HLI L KIL K P+
Sbjct: 25 QTSDEHLINLFAKILSKHVPE 45
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3
Query: 501 ISFKNLKRVAKELGENLTDE 560
I F+N+++ +ELG++L DE
Sbjct: 297 IGFENIEQYLRELGKSLVDE 316
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 235 ETSKKHLIYLIQKILEKSTPK 297
+TS +HLI L KIL K P+
Sbjct: 25 QTSDEHLINLFAKILSKHVPE 45
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 235 ETSKKHLIYLIQKILEKSTPK 297
+TS +HLI L KIL K P+
Sbjct: 25 QTSDEHLINLFAKILSKHVPE 45
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 235 ETSKKHLIYLIQKILEKSTPK 297
+TS +HLI L KIL K P+
Sbjct: 25 QTSDEHLINLFAKILSKHVPE 45
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 528 AKELGENLTDEELHEMIDEADRDGDGENKSEESCVS 635
+ E E EE E+ DE++ + + E++SEE S
Sbjct: 87 SSEEEEETESEEDSEVSDESESESESESESEEESES 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,939
Number of Sequences: 5004
Number of extensions: 49411
Number of successful extensions: 214
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -