Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_C23
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    26   4.1  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   7.1  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    25   7.1  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   7.1  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    25   7.1  
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    25   9.4  
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po...    25   9.4  

>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 281 WLLVWPFTHCYGIIFIHSLN-QDW 349
           W++V      Y ++F HSLN +DW
Sbjct: 162 WIMVVVLAQKYKVLFYHSLNLRDW 185


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 520 RNCYARHEWQHS*GI 564
           + CYA++EW+H  GI
Sbjct: 147 QKCYAKNEWRHVLGI 161


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +1

Query: 340 SRLVLIICVSSYFILMGILTLY----TTLKEKGIFVVA 441
           S+L     ++  FIL+GIL LY     TL  KGI  VA
Sbjct: 413 SKLSATALIADVFILLGILYLYFWDVITLATKGIADVA 450


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 481 GFPDPWCYFQPSPWLPQ 431
           GF D +C  Q S WLP+
Sbjct: 451 GFADNFCNIQKSHWLPE 467


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 499 TRR*IQSRNCYARHEWQHS 555
           T R  QSRNC+  H++Q+S
Sbjct: 18  TGRKCQSRNCFFSHDFQNS 36


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 600 FTSMKLANDLVTDASRV--LPFVSRITITRLYLSSCFF 493
           F+  K    ++T  S++  +P+V+R     +YL++ FF
Sbjct: 208 FSGYKFVGLILTSLSKLFEMPWVTRFVFLYMYLATAFF 245


>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 167

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 17/72 (23%), Positives = 30/72 (41%)
 Frame = +1

Query: 235 KESFALIDGRLFXXXXXXXXXXXXXXWDYLYPFPQSRLVLIICVSSYFILMGILTLYTTL 414
           K+SF   D RL                +Y+Y F   +  L   +  YF+   +LT ++++
Sbjct: 27  KQSFVFEDIRLLIAIACIIPAGLAFGIEYVYGFGVLKSYLKYLLPLYFLASCLLTFWSSV 86

Query: 415 KEKGIFVVAKEK 450
            +     VA +K
Sbjct: 87  VKGSTVYVATKK 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,536
Number of Sequences: 5004
Number of extensions: 49410
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)