Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_C23
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-9|CAA21529.1|  180|Caenorhabditis elegans Hypothetical ...    79   3e-15
Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF036693-11|AAK29788.1|  392|Caenorhabditis elegans Hypothetical...    29   3.8  
U27312-13|AAA68256.1|  162|Caenorhabditis elegans Hypothetical p...    27   8.7  

>AL032626-9|CAA21529.1|  180|Caenorhabditis elegans Hypothetical
           protein Y37D8A.10 protein.
          Length = 180

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
 Frame = +1

Query: 136 TAEAAKI-NKWDGAAAKNAVDDAIREVMTGDLKCKESFALIDGRLFXXXXXXXXXXXXXX 312
           T E  K+ NKWDG   KNA+D+ +++++   +   ES  L++ RL               
Sbjct: 2   TDEPVKVVNKWDGPTVKNALDEVVKKILNDKVGWTESHNLMNLRLLISFIGVAFSAFACG 61

Query: 313 WDYLYPFPQSRLVLIICVSSYFILMGILTLYTTLKEKGIFVVAKEKVGNNTR 468
           +DY  PFP+S++VL +C  SYFI MGIL +Y    EK     A E  G  +R
Sbjct: 62  YDYYEPFPKSKIVLAVCSVSYFICMGILQMYQWYVEKDCIYEATEVDGKQSR 113



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +2

Query: 473 WEASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEI 637
           W  SS +K HDDKY L    +   G + +  +TKS   +ID +G ++  +V  E+
Sbjct: 115 WAWSSEIKAHDDKYTLSAEFK-KEGRSGQGKITKSIGAYIDNDGEIIVPLVKKEV 168


>Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical
           protein T20B3.1 protein.
          Length = 608

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 557 HECCHSCLA*QLRDCIYRRVSLHKNWL 477
           HE  HS L  QL+  +  R   HKNWL
Sbjct: 46  HEFQHSELGAQLQSALENRAKNHKNWL 72


>AF036693-11|AAK29788.1|  392|Caenorhabditis elegans Hypothetical
           protein C49A9.1 protein.
          Length = 392

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 467 GVWEASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVNGT 607
           G WE   Y  K +   N  +V+ + NGN  +  +T +  N+   N T
Sbjct: 295 GKWECEQYNNKIEPLINGTVVINEYNGN-EKVELTTTVTNYKPKNNT 340


>U27312-13|AAA68256.1|  162|Caenorhabditis elegans Hypothetical
           protein F26A1.14 protein.
          Length = 162

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/57 (28%), Positives = 32/57 (56%)
 Frame = +2

Query: 476 EASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITQA 646
           E S   K   + +  +I++R   G+ + +++ +   N  + NG +V+N VSN IT++
Sbjct: 15  EISDIQKCLVEGHRTIILIRGVTGSGK-STLARELVNHSE-NGVIVKNDVSNNITRS 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,024,433
Number of Sequences: 27780
Number of extensions: 284144
Number of successful extensions: 713
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)