Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_C23
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   3.4  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   5.9  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   5.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   7.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.8  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -3

Query: 597 TSMKLANDLVTDASRVLPFVSRITITRLYLSSCF 496
           T++     L++  +  LP +S +    +YL +CF
Sbjct: 258 TTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCF 291


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -3

Query: 597 TSMKLANDLVTDASRVLPFVSRITITRLYLSSCF 496
           T++     L++  +  LP +S +    +YL +CF
Sbjct: 258 TTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCF 291


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -3

Query: 597 TSMKLANDLVTDASRVLPFVSRITITRLYLSSCF 496
           T++     L++  +  LP +S +    +YL +CF
Sbjct: 197 TTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCF 230


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 603 PFTSMKLANDLVTDASRVLPFVSRITI 523
           PFT      + V + S  LPF+ R  I
Sbjct: 295 PFTPFGPVTEKVNNDSNSLPFIDRTPI 321


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 603 PFTSMKLANDLVTDASRVLPFVSRITI 523
           PFT      + V + S  LPF+ R  I
Sbjct: 295 PFTPFGPVTEKVNNDSNSLPFIDRTPI 321


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 121 YNMSETAEAAKINKWDGAAAKNAVDDAIREVMTGDLK 231
           + + E     +IN  D    +N  D  ++ ++TGD K
Sbjct: 119 HELKEKHLTQRINSCDLLKKRNENDPFLKRLITGDEK 155


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 170 PSHLLIFAASAVSDMLYILK 111
           P+ ++  A S+VSD LY+L+
Sbjct: 406 PTSVIQAATSSVSDDLYLLE 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,247
Number of Sequences: 438
Number of extensions: 3987
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)