Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_C18
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0992 - 7705550-7705629,7706046-7706676,7707217-7707669           29   2.4  
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039...    29   3.2  
02_01_0436 - 3166764-3166949,3167115-3167258,3167343-3167469,316...    27   9.8  

>06_01_0992 - 7705550-7705629,7706046-7706676,7707217-7707669
          Length = 387

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/46 (43%), Positives = 23/46 (50%)
 Frame = +1

Query: 472 GPVRTLXRRSGVGAADSRTSRGTIMFI*HLFYTLALSSFFGKLILV 609
           GP R   RRSG+ A    TS  T   +  LFY    S   GKLIL+
Sbjct: 338 GPARVALRRSGIYAVFPYTSFCTPGNV-LLFYAFVGSDLIGKLILL 382


>02_05_0484 -
           29401195-29401404,29401572-29401755,29401866-29403973,
           29404320-29404403,29404507-29404777,29404864-29405117,
           29405513-29405722,29406357-29406503
          Length = 1155

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/76 (26%), Positives = 37/76 (48%)
 Frame = +2

Query: 74  SIKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTF 253
           S+K   V +K K+   +N         + L   +    +  T +L+K+ DEY + ++S  
Sbjct: 444 SLKATVVAEKEKILQEQN--------NLKLTEEERQEHIMLTAQLKKEIDEYRMRSNSLS 495

Query: 254 KTTEMKFKPGEEFEED 301
           + TE   K  ++FEE+
Sbjct: 496 EETEDLRKQRQKFEEE 511


>02_01_0436 -
           3166764-3166949,3167115-3167258,3167343-3167469,
           3167746-3167825,3167933-3168184,3168271-3168399,
           3169039-3169088,3169221-3169323,3169429-3169548,
           3169725-3169786,3169873-3169915,3169995-3170183,
           3170299-3170367,3170460-3170539,3170648-3170723
          Length = 569

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 472 LVDSGASHVLSCHHSFHLLRAEFPDVSDFKTVGG 371
           L+D+           +HL   +FPDV  FK V G
Sbjct: 498 LIDNLGDEFAKVQREYHLPAGDFPDVEHFKEVLG 531


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,377,121
Number of Sequences: 37544
Number of extensions: 336966
Number of successful extensions: 873
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)