Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_C11
(649 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132902-1|CAB81996.1| 246|Caenorhabditis elegans Hypothetical ... 263 9e-71
AF099919-13|AAC68798.1| 636|Caenorhabditis elegans Hypothetical... 29 3.8
Z81068-6|CAB02986.1| 725|Caenorhabditis elegans Hypothetical pr... 28 6.6
AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascula... 28 6.6
AF067948-4|AAO25983.1| 756|Caenorhabditis elegans Egl-27 relate... 28 6.6
AF067948-3|AAO25984.1| 870|Caenorhabditis elegans Egl-27 relate... 28 6.6
AF067948-2|AAD34654.1| 870|Caenorhabditis elegans Egl-27 relate... 28 6.6
AF067948-1|AAD34653.1| 1022|Caenorhabditis elegans Egl-27 relate... 28 6.6
U50193-1|AAA91247.2| 532|Caenorhabditis elegans Hypothetical pr... 27 8.7
AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical ... 27 8.7
>AL132902-1|CAB81996.1| 246|Caenorhabditis elegans Hypothetical
protein Y71A12B.1 protein.
Length = 246
Score = 263 bits (644), Expect = 9e-71
Identities = 126/186 (67%), Positives = 148/186 (79%)
Frame = +3
Query: 51 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 230
M+LN +YPATG QK FEV +E KLR+F+EKRM EV D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1 MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60
Query: 231 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 410
FPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG E
Sbjct: 61 FPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGE 120
Query: 411 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKI 590
I GLTD +PR+LGPKRASKIRKLFNL+K DDV +YV+ +G + APKI
Sbjct: 121 IEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDG----VTKTIAPKI 176
Query: 591 QRLVTP 608
QRL+TP
Sbjct: 177 QRLITP 182
>AF099919-13|AAC68798.1| 636|Caenorhabditis elegans Hypothetical
protein F40G9.1 protein.
Length = 636
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +3
Query: 69 YPATGCQKLFEVVDEHK---LRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 227
Y G ++FE+ E K RIF EK + + ++ ++ L++ G NDK+
Sbjct: 6 YLHVGLNRIFEIAKEKKNGKFRIFLEKNVKNVIFLQEIFEKSLFLCLKINGSNDKK 61
>Z81068-6|CAB02986.1| 725|Caenorhabditis elegans Hypothetical
protein F25H5.5 protein.
Length = 725
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 466 PKSVSCSTLAKKMMYVVMSSNACSQPRKEKKMLNPDIRHLRS 591
PKS+ S KK + MS+ + + +KM D HL++
Sbjct: 105 PKSLLTSETLKKKLQASMSAKRRKEQEQRRKMYEEDNEHLKA 146
>AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascular
endothelial growthfactor) receptor family protein 2
protein.
Length = 518
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 84 CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 227
C K F+ + ++ E+++ E E Q D W G LR G DK+
Sbjct: 272 CVKFFKNYMQEEVVQNIERKLQFEREEQQELDSWTGKSLRAEGVEDKE 319
>AF067948-4|AAO25983.1| 756|Caenorhabditis elegans Egl-27 related
protein 1, isoform c protein.
Length = 756
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 5 CWLFHWLTFDGIDRSHEVKRF 67
CW+ W F G+++ HE++RF
Sbjct: 614 CWI-QWKKFAGLNQKHELERF 633
>AF067948-3|AAO25984.1| 870|Caenorhabditis elegans Egl-27 related
protein 1, isoform d protein.
Length = 870
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 5 CWLFHWLTFDGIDRSHEVKRF 67
CW+ W F G+++ HE++RF
Sbjct: 614 CWI-QWKKFAGLNQKHELERF 633
>AF067948-2|AAD34654.1| 870|Caenorhabditis elegans Egl-27 related
protein 1, isoform b protein.
Length = 870
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 5 CWLFHWLTFDGIDRSHEVKRF 67
CW+ W F G+++ HE++RF
Sbjct: 614 CWI-QWKKFAGLNQKHELERF 633
>AF067948-1|AAD34653.1| 1022|Caenorhabditis elegans Egl-27 related
protein 1, isoform a protein.
Length = 1022
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 5 CWLFHWLTFDGIDRSHEVKRF 67
CW+ W F G+++ HE++RF
Sbjct: 614 CWI-QWKKFAGLNQKHELERF 633
>U50193-1|AAA91247.2| 532|Caenorhabditis elegans Hypothetical
protein ZK328.4 protein.
Length = 532
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 405 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSK-EDDVRRYVVKRVLPAKEGKENAKPRHK 578
Q P + D N R PK K K+ +LS E+D + V P+KE KE K R K
Sbjct: 109 QLYPEMFDSNQKPRQKPKEVKKALKVESLSDYENDDKENVPPCGKPSKE-KEEKKQRTK 166
>AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical
protein Y48G1C.5 protein.
Length = 1161
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 375 LALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVV 524
L L +K QE+ P +GPK A +IR L L + + +VV
Sbjct: 1010 LLLTFGKKRTQEVTHYQYTGWPEHMGPKDAEEIRYLLKLVTDSERPVFVV 1059
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,336,302
Number of Sequences: 27780
Number of extensions: 338879
Number of successful extensions: 983
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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