Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_C07
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.42 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.42 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.42 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.42 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.42 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.42 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.42 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.42 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   2.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   2.9  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   6.8  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   6.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.0  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 295 KPFSNEGKPLVVQFTVKHEQDID 363
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 295 KPFSNEGKPLVVQFTVKHEQDID 363
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 295 KPFSNEGKPLVVQFTVKHEQDID 363
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 295 KPFSNEGKPLVVQFTVKHEQDID 363
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 295 KPFSNEGKPLVVQFTVKHEQDID 363
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 295 KPFSNEGKPLVVQFTVKHEQDID 363
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 295 KPFSNEGKPLVVQFTVKHEQDID 363
           +P +NE +PL V+F +  +Q ID
Sbjct: 71  RPVANESEPLEVKFGITLQQIID 93


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 295 KPFSNEGKPLVVQFTVKHEQDID 363
           +P +NE +PL V+F +  +Q ID
Sbjct: 71  RPVANESEPLEVKFGITLQQIID 93


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 251 KPLKMRGSMLSPVSSNRSVMRV 316
           +P   RG+++SP  + R  M+V
Sbjct: 893 EPYNQRGTVVSPPPTKRRTMKV 914


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 251 KPLKMRGSMLSPVSSNRSVMRV 316
           +P   RG+++SP  + R  M+V
Sbjct: 931 EPYNQRGTVVSPPPTKRRTMKV 952


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 146 HESSGNFSSKNTSQFIEDNASKLTTTSTTA 57
           HE   N+ SKN +Q + +    +   S TA
Sbjct: 184 HEKLRNWFSKNVNQTVAETVRIIYGGSVTA 213


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 143 ESSGNFSSKNTSQFIE 96
           + +GNF+ KNT   ++
Sbjct: 74  DENGNFNEKNTRDIVQ 89


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 371 PPQSMSCSCL 342
           P Q+ SCSCL
Sbjct: 320 PSQASSCSCL 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,070
Number of Sequences: 438
Number of extensions: 2895
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)