Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_C06
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    26   4.1  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    26   5.4  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   5.4  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.1  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   7.1  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   9.4  
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...    25   9.4  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.4  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   9.4  

>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 143  SWFTMTTPITPLWAWILLIVSSTSVAIMYEP 51
            SWFT T P T   +  +++VS T+ A    P
Sbjct: 1097 SWFTTTVPATGTRSGSVIVVSPTAPACSSTP 1127


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 402 FSEHYLLYTGTILEPPMVIFLALRNKFSVV--DFFHW 506
           ++  Y+  +GT+ + P +I LA+RN  S    + F+W
Sbjct: 344 YTASYVANSGTLYDYPTLIRLAIRNTLSPSKDEIFNW 380


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/59 (23%), Positives = 31/59 (52%)
 Frame = +3

Query: 324  YTEHIGLNLYLQKTVG*FIIKIILYCFSEHYLLYTGTILEPPMVIFLALRNKFSVVDFF 500
            Y+ + G ++YL   +   ++   +  ++ HY+ +  T+    +  F+   ++FS VDFF
Sbjct: 1412 YSLYTGSSIYLGSRLIMMLLFGTMTVWTTHYVYFWVTMFALVICPFIYNPHQFSFVDFF 1470


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 488 GRFFSLVAVIGHKFFNGN*FITVYLEDQ*LMIKLMALNAFQTNVILVL 631
           G F +L A+I   F   + F++ +LED+ +M+  + L      + LVL
Sbjct: 351 GNFIALSALIVAPFILASSFLSRWLEDRHIMLGGLFLGILAVAIHLVL 398


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 378 IIKIILYCFSEHYLLYTGTILEPPMVIFLALRNK 479
           +I  +L   SE+Y+LY   I  P +VI   +R+K
Sbjct: 554 LIDQLLELLSEYYVLYATDISFPELVIPAIVRSK 587


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 88  IKRIQAHKGVMGVVIVNHEG 147
           I+RIQAH G +  + V H+G
Sbjct: 470 IERIQAHDGAIWDLAVGHDG 489


>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = -1

Query: 173 LSNELLIGIPSWFTMTTPITPLWAWILLIVSSTSVA----IMYEPQN*NFLPLTTHK 15
           ++ E  + +P W   T  + P     L+ V +T +A    +  +PQ+ NFL +T H+
Sbjct: 98  IAEEGRVYLPYWMMTTLSLEP---GDLVRVINTDIAQGSYVKLQPQSVNFLDITDHR 151


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 261 SSQKSKT*DTHCTGQRIHINCYTEHIGL 344
           SS+K+K  DT     +   + YT+HIGL
Sbjct: 245 SSEKTKYLDTIAQDYKGSADSYTDHIGL 272


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = +2

Query: 209 SLLRRPGMWTPQMS*HSFESEVEDMRYSLHRTENSY*LLYRTHRIKSLLTKNSRLIYN*N 388
           SLL+ P + T ++S    +S++ D+R +L   ++       ++ +  +L   S L     
Sbjct: 357 SLLKNPSLTTSELSTQFQDSDLNDIRLALENLQSQMVAQSSSYSLDRMLVAISILGACSI 416

Query: 389 YFILFFRTLF 418
             ++ FR L+
Sbjct: 417 LSLILFRNLY 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,406
Number of Sequences: 5004
Number of extensions: 57138
Number of successful extensions: 121
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)