Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_C06
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0154 + 2298432-2299415                                           29   3.2  
01_06_1592 + 38495121-38495305,38496378-38496459,38496652-384967...    29   3.2  
10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121     28   7.4  
04_04_1553 - 34363848-34366058,34369087-34370451                       27   9.7  
04_04_1550 - 34332948-34335986                                         27   9.7  

>09_01_0154 + 2298432-2299415
          Length = 327

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
 Frame = -1

Query: 335 VFCITINMNSLSGAMSISCL----RLLTRRNVNSFVESTFLAFSVSCPISPAYNTEVALS 168
           V  ++I ++S  G  +   L    RL+  R   + V  T +A  V   I P Y    ALS
Sbjct: 206 VIPVSIAVSSAEGRWAAPALWLAWRLMKARRKEAGV-LTLIACLVPAAICPVYTIAAALS 264

Query: 167 NELLIGIPSWFTMTTPITPLWAWILLIVSSTSVAIMY 57
           +ELL     W         L    L ++S+T+  + Y
Sbjct: 265 DELLFTFYVWLLGVVFGFFLLPVALQLLSTTAATVFY 301


>01_06_1592 +
           38495121-38495305,38496378-38496459,38496652-38496716,
           38496914-38497013,38497300-38497341,38497486-38497527,
           38497651-38497932
          Length = 265

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 163 SLDNATSVLYAGLIGQLTEKA-RNVDSTNELTFLRVRSRRHEILIA 297
           +L NA   L    IG +T K  +++++  E    R+RS++HE+L +
Sbjct: 105 TLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFS 150


>10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121
          Length = 499

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 221 FSVSCPISPAYNTEVALSNELLIGIPSWFTMTTPITP 111
           F +S P++  +N E   S +L   +P+ FT+   ITP
Sbjct: 40  FDIS-PVNYEFNVEAMSSEKLAFNLPAVFTIGPKITP 75


>04_04_1553 - 34363848-34366058,34369087-34370451
          Length = 1191

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -1

Query: 326 ITINMNSLSGAMSISCLRLLTRRN 255
           +++  NSLSG ++I C RLLTR N
Sbjct: 764 VSLRNNSLSGEITIDC-RLLTRLN 786


>04_04_1550 - 34332948-34335986
          Length = 1012

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -1

Query: 326 ITINMNSLSGAMSISCLRLLTRRN 255
           +++  NSLSG ++I C RLLTR N
Sbjct: 296 VSLRNNSLSGEITIDC-RLLTRLN 318


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,827,359
Number of Sequences: 37544
Number of extensions: 319341
Number of successful extensions: 660
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)