Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_B23
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   208   7e-55
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   207   9e-55
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    27   1.8  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   3.1  
SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.1  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   9.4  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   9.4  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   9.4  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  208 bits (507), Expect = 7e-55
 Identities = 96/156 (61%), Positives = 111/156 (71%)
 Frame = +1

Query: 181 FVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH 360
           FVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTH
Sbjct: 26  FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTH 85

Query: 361 RSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIE 540
           RSGQ AFGNMCR GRMFAPTK WR+WH                          ARGH IE
Sbjct: 86  RSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIE 145

Query: 541 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDIL 648
           +IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVI 181


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  207 bits (506), Expect = 9e-55
 Identities = 96/156 (61%), Positives = 111/156 (71%)
 Frame = +1

Query: 181 FVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH 360
           FVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTH
Sbjct: 26  FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTH 85

Query: 361 RSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIE 540
           RSGQ AFGNMCR GRMFAPTK WR+WH                          ARGH IE
Sbjct: 86  RSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIE 145

Query: 541 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDIL 648
           +IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVV 181


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 216  DQVRTYGRLEHETGGAWLXPCTVSLFSEYTDTK 118
            D  +TY  +E E  G +    T   FSEY D K
Sbjct: 905  DLAKTYFFIEDEGDGTYKFKLTYGAFSEYLDVK 937


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 104 SVARPLVSVYSEKSETVQGCSQAPPVSCSRRP 199
           ++ RP+    +E S++ +  SQAPP++  + P
Sbjct: 700 TIQRPIPIKNNEDSDSCKAFSQAPPIATKKPP 731


>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 104 SVARPLVSVYSEKSETVQGCSQAPPVSCSRRPYVRTWSMMFTF 232
           +V+ PL  VY   S T  GC Q  P+S   R   + + ++  F
Sbjct: 194 AVSSPLNVVYIGDSPTDFGCLQISPISILMRSNQKYYDILSRF 236


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 431 GAGTVASTSDSGERPWQQPLLL-PASQR 511
           G+ T+ STS S  RP+ +P L+ P+++R
Sbjct: 507 GSPTILSTSFSLARPYPEPALVSPSTER 534


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 156 CTVSLFSEYTDTKGRATDRLISLL 85
           C V ++SEYT   G ++  L++L+
Sbjct: 492 CVVKIWSEYTKNTGESSPVLVALV 515


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 7   FFTPPXAWRMVFITAI 54
           FF  P  WRM FIT I
Sbjct: 59  FFPSPDNWRMSFITVI 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,835
Number of Sequences: 5004
Number of extensions: 50068
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)