Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_B23
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   189   2e-48
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    32   0.40 
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  189 bits (460), Expect = 2e-48
 Identities = 88/154 (57%), Positives = 107/154 (69%)
 Frame = +1

Query: 184 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 363
           VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGGTHR
Sbjct: 26  VFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHR 85

Query: 364 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 543
           SGQGAFGNMCRGG MFAP K +RRWH                         QARGH+I++
Sbjct: 86  SGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQ 145

Query: 544 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDI 645
           + E+PLVV+DKV+   KTK+AV+FLRR   W+DI
Sbjct: 146 VAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADI 179



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 110 ARPLVSVYSEKSETVQGCSQAPPV 181
           ARPLV+VY EK E  Q   + P V
Sbjct: 3   ARPLVTVYDEKYEATQSQIRLPAV 26


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 28/91 (30%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
 Frame = +1

Query: 163 QPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV 342
           +PS S+    AP +P          + N R    V K   H+    SW T     +  R 
Sbjct: 111 KPSVSKIAEAAP-KPIFKVARGTVKTVNKRGTKGVQKMPNHRLEGNSWETNGLQNQTARG 169

Query: 343 RGGGTHR---SGQGAFGNMCRGGRMFAPTKP 426
            GGG  R   SG    G   RGGR     KP
Sbjct: 170 GGGGRGRGRGSGGRGRGGFNRGGRFNGAPKP 200


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
           protein K03H1.5 protein.
          Length = 1385

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 309 YRTCCRPNSSCPWWWYP*VRSGC--LR*HVSWWTYVRPH 419
           YRTCC+    C ++++  + +GC   R   + + Y  PH
Sbjct: 823 YRTCCKYADHCEFYYWRRMTNGCQDYRAPAAGYIYGEPH 861


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 158 PAPSRSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 57
           P  S +S N PT+K+ L I+   YF     PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,769,140
Number of Sequences: 27780
Number of extensions: 305062
Number of successful extensions: 926
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)